RNA id: TU240277


Basic Information

Item Value
RNA id TU240277
length 343
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G211808
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100466074 ~ 100466416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCACGGTACCTGTAGAACACAGGAAGTAGTAGAGGAGTGGTtatacactgaaacacacacacactctgggtcGGTACACATTAAATGTATTCtaactcacagacagacagacagacagacagacagacacacacacacacacacccctacctgCAGGTGGTGATGACAGAGCTGTTGAACCATCCAGGGCTCTCTCCGTCATCAGGCCGGTTGTCCTCAGAGAACCCAGAGATGTTGAACACGGACAGGCTATTGTTGATGTAGCCCTTCATAGAGAGATCGTTGCTGTAGGCATACATGTACACCAGCCGAGGAATCATGTCTGATGTGAAGGCTACGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240276 lncRNA upstream 430 100465305 ~ 100465644 (+) True G211807
TU240275 lncRNA upstream 1070 100464798 ~ 100465004 (+) True G211806
TU240274 lncRNA upstream 1608 100462949 ~ 100464466 (+) True G211805
TU240273 lncRNA upstream 3520 100462000 ~ 100462554 (+) True G211804
TU240270 lncRNA upstream 11238 100454636 ~ 100454836 (+) True G211801
TU240279 lncRNA downstream 1996 100468412 ~ 100468925 (+) True G211810
TU240284 lncRNA downstream 12640 100479056 ~ 100479743 (+) True G211815
TU240288 lncRNA downstream 18319 100484735 ~ 100485036 (+) True G211818
TU240306 lncRNA downstream 39132 100505548 ~ 100505858 (+) True G211833
TU240317 lncRNA downstream 67746 100534162 ~ 100536464 (+) True G211844
XM_021578569.2 mRNA upstream 21838 100438486 ~ 100444236 (+) True LOC110501156
XM_036934528.1 mRNA upstream 46900 100417074 ~ 100419174 (+) True LOC118936889
XR_005039288.1 mRNA upstream 114128 100342587 ~ 100351946 (+) False LOC110501220
XM_036961133.1 mRNA downstream 172158 100638574 ~ 100655606 (+) False sigirr
XM_036961124.1 mRNA downstream 172162 100638578 ~ 100655606 (+) True sigirr
XM_036961077.1 mRNA downstream 319115 100785531 ~ 100826270 (+) False LOC110502612
XM_036961073.1 mRNA downstream 319115 100785531 ~ 100848341 (+) True LOC110502612
XM_036934538.1 mRNA downstream 381758 100848174 ~ 100859262 (+) False LOC118936893
TU240232 other upstream 4093 100459657 ~ 100461981 (+) True G211779
TU239242 other upstream 566197 99896619 ~ 99899877 (+) False LOC110500919
TU240278 other downstream 1262 100467678 ~ 100468157 (+) True G211809
TU241421 other downstream 1015995 101482411 ~ 101486796 (+) False G212656
TU241428 other downstream 1015995 101482411 ~ 101486796 (+) True G212656
TU241453 other downstream 1043344 101509760 ~ 101510842 (+) False G212674
TU241455 other downstream 1043344 101509760 ~ 101516104 (+) True G212674

Expression Profile