RNA id: TU240335


Basic Information

Item Value
RNA id TU240335
length 265
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G211855
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100573905 ~ 100574169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actctctgagggtgtctcatggggagttgggataatgactgaccctgggagtgaccccactctctgagggtgtctcagggagagttgggataatgactgaccctgggagtgaccgcactctctgagggtgtctcagagggagttgggataatgactgaccctgggagtgaccccactctctgagggtgtctcagggggagttgggataatgactgaccctgggagtgaccccactctctgagggtgtctcagggagagttgggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240323 lncRNA upstream 30235 100543322 ~ 100543670 (+) True G211849
TU240317 lncRNA upstream 37441 100534162 ~ 100536464 (+) True G211844
TU240306 lncRNA upstream 68047 100505548 ~ 100505858 (+) True G211833
TU240288 lncRNA upstream 88869 100484735 ~ 100485036 (+) True G211818
TU240284 lncRNA upstream 94162 100479056 ~ 100479743 (+) True G211815
TU240336 lncRNA downstream 6527 100580696 ~ 100580922 (+) True G211856
TU240341 lncRNA downstream 22145 100596314 ~ 100617684 (+) False G211859
TU240340 lncRNA downstream 42187 100616356 ~ 100617684 (+) True G211859
TU240345 lncRNA downstream 44603 100618772 ~ 100620204 (+) True G211862
TU240343 lncRNA downstream 46675 100620844 ~ 100633051 (+) True G211861
XM_021578569.2 mRNA upstream 129669 100438486 ~ 100444236 (+) True LOC110501156
XM_036934528.1 mRNA upstream 154731 100417074 ~ 100419174 (+) True LOC118936889
XR_005039288.1 mRNA upstream 221959 100342587 ~ 100351946 (+) False LOC110501220
XM_036961133.1 mRNA downstream 64405 100638574 ~ 100655606 (+) False sigirr
XM_036961124.1 mRNA downstream 64409 100638578 ~ 100655606 (+) True sigirr
XM_036961077.1 mRNA downstream 211362 100785531 ~ 100826270 (+) False LOC110502612
XM_036961073.1 mRNA downstream 211362 100785531 ~ 100848341 (+) True LOC110502612
XM_036934538.1 mRNA downstream 274005 100848174 ~ 100859262 (+) False LOC118936893
TU240278 other upstream 105748 100467678 ~ 100468157 (+) True G211809
TU240232 other upstream 111924 100459657 ~ 100461981 (+) True G211779
TU239244 other upstream 674028 99896619 ~ 99899877 (+) False LOC110500919
TU241421 other downstream 908242 101482411 ~ 101486796 (+) False G212656
TU241428 other downstream 908242 101482411 ~ 101486796 (+) True G212656
TU241453 other downstream 935591 101509760 ~ 101510842 (+) False G212674
TU241455 other downstream 935591 101509760 ~ 101516104 (+) True G212674
TU241479 other downstream 980216 101554385 ~ 101556370 (+) False G212690

Expression Profile