RNA id: TU240343


Basic Information

Item Value
RNA id TU240343
length 250
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G211861
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100620844 ~ 100633051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctgaggctgtctcagggggagttgggataatgactgaccctgggagtgacccaactctctgagggtgtctcagggggagttgggataatgactgaccctggccaTGACCCTACTCTCttagggtgtctcagggagagttgggataatgactgaccctgggagtgaccccactctctgagggtgtaccagggggagttgggataatggctgaccctgggagtgaccccactctctgagggtgtctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240345 lncRNA upstream 640 100618772 ~ 100620204 (+) True G211862
TU240341 lncRNA upstream 3160 100596314 ~ 100617684 (+) False G211859
TU240340 lncRNA upstream 3160 100616356 ~ 100617684 (+) True G211859
TU240336 lncRNA upstream 39922 100580696 ~ 100580922 (+) True G211856
TU240335 lncRNA upstream 46675 100573905 ~ 100574169 (+) True G211855
TU240349 lncRNA downstream 4321 100637372 ~ 100637676 (+) True G211865
TU240305 lncRNA downstream 5458 100638509 ~ 100656961 (+) True G211832
TU240350 lncRNA downstream 6771 100639822 ~ 100641339 (+) False G211866
TU240351 lncRNA downstream 7629 100640680 ~ 100641339 (+) True G211866
TU240484 lncRNA downstream 29700 100662751 ~ 100662967 (+) True G211974
XM_021578569.2 mRNA upstream 176608 100438486 ~ 100444236 (+) True LOC110501156
XM_036934528.1 mRNA upstream 201670 100417074 ~ 100419174 (+) True LOC118936889
XR_005039288.1 mRNA upstream 268898 100342587 ~ 100351946 (+) False LOC110501220
XM_036961133.1 mRNA downstream 5523 100638574 ~ 100655606 (+) False sigirr
XM_036961124.1 mRNA downstream 5527 100638578 ~ 100655606 (+) True sigirr
XM_036961077.1 mRNA downstream 152480 100785531 ~ 100826270 (+) False LOC110502612
XM_036961073.1 mRNA downstream 152480 100785531 ~ 100848341 (+) True LOC110502612
XM_036934538.1 mRNA downstream 215123 100848174 ~ 100859262 (+) False LOC118936893
TU240278 other upstream 152687 100467678 ~ 100468157 (+) True G211809
TU240232 other upstream 158863 100459657 ~ 100461981 (+) True G211779
TU239244 other upstream 720967 99896619 ~ 99899877 (+) False LOC110500919
TU241421 other downstream 849360 101482411 ~ 101486796 (+) False G212656
TU241428 other downstream 849360 101482411 ~ 101486796 (+) True G212656
TU241453 other downstream 876709 101509760 ~ 101510842 (+) False G212674
TU241455 other downstream 876709 101509760 ~ 101516104 (+) True G212674
TU241479 other downstream 921334 101554385 ~ 101556370 (+) False G212690

Expression Profile