RNA id: TU240541


Basic Information

Item Value
RNA id TU240541
length 273
lncRNA type intronic
GC content 0.37
exon number 2
gene id G212019
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100762763 ~ 100765529 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacacggtcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacacggtcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacacggtcctctgtagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240537 lncRNA upstream 20630 100737298 ~ 100742133 (+) True G212016
TU240524 lncRNA upstream 33198 100727401 ~ 100729565 (+) False G212009
TU240568 lncRNA downstream 19424 100784953 ~ 100785344 (+) True G212031
TU240604 lncRNA downstream 66091 100831620 ~ 100832042 (+) True G212065
TU240553 lncRNA downstream 88456 100853985 ~ 100860603 (+) False LOC118936893
TU240549 lncRNA downstream 92463 100857992 ~ 100860427 (+) False LOC118936893
TU240552 lncRNA downstream 92463 100857992 ~ 100860603 (+) False LOC118936893
XM_036961133.1 mRNA upstream 107157 100638574 ~ 100655606 (+) False sigirr
XM_036961124.1 mRNA upstream 107157 100638578 ~ 100655606 (+) True sigirr
XM_021578569.2 mRNA upstream 318527 100438486 ~ 100444236 (+) True LOC110501156
XM_036934528.1 mRNA upstream 343589 100417074 ~ 100419174 (+) True LOC118936889
XM_021578575.2 mRNA upstream 410817 100343056 ~ 100351946 (+) False LOC110501220
XM_036961077.1 mRNA downstream 20002 100785531 ~ 100826270 (+) False LOC110502612
XM_036961073.1 mRNA downstream 20002 100785531 ~ 100848341 (+) True LOC110502612
XM_036934538.1 mRNA downstream 82645 100848174 ~ 100859262 (+) False LOC118936893
XM_036934544.1 mRNA downstream 163839 100929368 ~ 100964786 (+) True LOC110501031
XM_036961196.1 mRNA downstream 579756 101345285 ~ 101371174 (+) True best1
TU240278 other upstream 294606 100467678 ~ 100468157 (+) True G211809
TU240232 other upstream 300782 100459657 ~ 100461981 (+) True G211779
TU239244 other upstream 862886 99896619 ~ 99899877 (+) False LOC110500919
TU241421 other downstream 716882 101482411 ~ 101486796 (+) False G212656
TU241428 other downstream 716882 101482411 ~ 101486796 (+) True G212656
TU241453 other downstream 744231 101509760 ~ 101510842 (+) False G212674
TU241455 other downstream 744231 101509760 ~ 101516104 (+) True G212674
TU241479 other downstream 788856 101554385 ~ 101556370 (+) False G212690

Expression Profile