RNA id: TU240566


Basic Information

Item Value
RNA id TU240566
length 339
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G212029
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100862168 ~ 100862506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgaagacatcaaaactatgaaataacacatatggaatcatggggcggcagggtggcctcgtggttggagcgttggactagtaatcgaaaggttgcaagttcaaatccccgagctgacaaggtacacatctgtcgttctgcccctgaacaggcagttaacccactgatcctagaccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaatgaaataaaaaaatgtagcGCAGTTGCAAACACCATCAAGCgctctgatgaaactggctctcatgaggacctgccacaggaaaggaagacccagagttacctctgctgcagaggata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240563 lncRNA upstream 134 100860657 ~ 100862034 (+) True G212027
TU240553 lncRNA upstream 1565 100853985 ~ 100860603 (+) False LOC118936893
TU240564 lncRNA downstream 633 100863139 ~ 100864212 (+) False G212028
TU240565 lncRNA downstream 1066 100863572 ~ 100864212 (+) True G212028
TU240672 lncRNA downstream 60024 100922530 ~ 100991554 (+) False G212106
TU240647 lncRNA downstream 102970 100965476 ~ 100967289 (+) True G212092
TU240695 lncRNA downstream 108152 100970658 ~ 100970982 (+) True G212121
XM_036934538.1 mRNA upstream 2906 100848174 ~ 100859262 (+) False LOC118936893
XM_036961073.1 mRNA upstream 13827 100785531 ~ 100848341 (+) True LOC110502612
XM_036961077.1 mRNA upstream 35898 100785531 ~ 100826270 (+) False LOC110502612
XM_036961133.1 mRNA upstream 206562 100638574 ~ 100655606 (+) False sigirr
XM_036934544.1 mRNA downstream 66862 100929368 ~ 100964786 (+) True LOC110501031
XM_036961196.1 mRNA downstream 482779 101345285 ~ 101371174 (+) True best1
XM_036961212.1 mRNA downstream 772124 101634630 ~ 101695484 (+) True LOC110516669
XM_036934561.1 mRNA downstream 1175532 102038038 ~ 102167821 (+) False LOC110502669
XM_036961240.1 mRNA downstream 1321853 102184359 ~ 102238260 (+) True LOC110501421
TU240278 other upstream 394011 100467678 ~ 100468157 (+) True G211809
TU240232 other upstream 400187 100459657 ~ 100461981 (+) True G211779
TU239244 other upstream 962291 99896619 ~ 99899877 (+) False LOC110500919
TU241421 other downstream 619905 101482411 ~ 101486796 (+) False G212656
TU241428 other downstream 619905 101482411 ~ 101486796 (+) True G212656
TU241453 other downstream 647254 101509760 ~ 101510842 (+) False G212674
TU241455 other downstream 647254 101509760 ~ 101516104 (+) True G212674
TU241479 other downstream 691879 101554385 ~ 101556370 (+) False G212690

Expression Profile