RNA id: TU240564


Basic Information

Item Value
RNA id TU240564
length 1074
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G212028
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100863139 ~ 100864212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgaatgagtaggtgcgcccaaacttttgactggtactttatgtcTTGGGACATAGGCATCATGTATAGACTAACAGACTTGTGTATCCATCTCCCTGACCTGAATCATATCTGGACTGGGCTCGAGGAATGACAGCCTCTGTCCCTGATCATACATAACTCACCCGTCTCTAACGCCAGAAACAATATTTATTTTGACGTCTTACAATTTGAATACAGACCTGGGGCCGTATCTAGtgtgtgctgatctaggatcggtTTCGTCTTTTAAAATGACAACAAGAATATCATTACATGGACTGTAGGTTTAGGGTCAATTCCAATTTTTAATTCCAGTAAATTCagatttcaattcaattcaatgcttTTCAGTTAGGAACATTTGGAAATGGGGTTTACATTCTGAATGGATTAGAATAGAAATAGAATTGACCCTAGATCAGCCCCTCCTACTCTGACAGGCTTTGTGAGTACGGCCTCTTGGAACAAAAAAGGGCAATGTGTCACAGATGGAAATAAAATACATTACGAAGGCAGTTAGACCGGTCATACTGAACTTACACGTGCCTTACTTTGGCCAACAACAAAGCAATCATAGCAGGGTTTGGCTATTTTgctcagacagacacacccacataCTTTACAACCTTCAGAATGTCCTCCTCCCAGATTTTCCCCTGAGGCTCATTCCCCATAGACTGGGTGATCATTGATTCATACCCTATCATGTTACTCTCACGCCCCACAGTGAGCCGGGTGTCCTCTGCCATAGAGATAAAACAATAGACATTGAGCTTCAAATCAGCGGCACTAGCGGTCAGCGATCTTACCCAGGTACAGTCCTGATAAGTTAGTTCAAACATGTTAGTTTCAAACTATAGGGTAGCTTGTTCTATCTCCATGTCCTCTGTAGACTCCTTTTCACCTGTCCTCACAGCACACAATGCCATAGAGTGGCCAGCGCCACAGCCAATCACAAGAGGCCGGAGGGCAGGAATGGGCTGTGGTTCGCTGACATCTGTCTCGGAACCGTCCCCACACATCCCATGTTCGTTCCACCCCCAAGAGAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240566 lncRNA upstream 633 100862168 ~ 100862506 (+) True G212029
TU240563 lncRNA upstream 1105 100860657 ~ 100862034 (+) True G212027
TU240552 lncRNA upstream 2536 100857992 ~ 100860603 (+) False LOC118936893
TU240550 lncRNA upstream 2536 100858247 ~ 100860603 (+) False LOC118936893
TU240554 lncRNA upstream 2536 100858247 ~ 100860603 (+) True LOC118936893
TU240672 lncRNA downstream 58318 100922530 ~ 100991554 (+) False G212106
TU240647 lncRNA downstream 101264 100965476 ~ 100967289 (+) True G212092
TU240695 lncRNA downstream 106446 100970658 ~ 100970982 (+) True G212121
TU240696 lncRNA downstream 110015 100974227 ~ 100974671 (+) True G212122
TU240677 lncRNA downstream 126292 100990504 ~ 100991554 (+) True G212106
XM_036934538.1 mRNA upstream 3877 100848174 ~ 100859262 (+) False LOC118936893
XM_036961073.1 mRNA upstream 14798 100785531 ~ 100848341 (+) True LOC110502612
XM_036961077.1 mRNA upstream 36869 100785531 ~ 100826270 (+) False LOC110502612
XM_036961133.1 mRNA upstream 207533 100638574 ~ 100655606 (+) False sigirr
XM_036934544.1 mRNA downstream 65156 100929368 ~ 100964786 (+) True LOC110501031
XM_036961196.1 mRNA downstream 481073 101345285 ~ 101371174 (+) True best1
XM_036961212.1 mRNA downstream 770418 101634630 ~ 101695484 (+) True LOC110516669
XM_036934561.1 mRNA downstream 1173826 102038038 ~ 102167821 (+) False LOC110502669
XM_036961240.1 mRNA downstream 1320147 102184359 ~ 102238260 (+) True LOC110501421
TU240278 other upstream 394982 100467678 ~ 100468157 (+) True G211809
TU240232 other upstream 401158 100459657 ~ 100461981 (+) True G211779
TU239244 other upstream 963262 99896619 ~ 99899877 (+) False LOC110500919
TU241421 other downstream 618199 101482411 ~ 101486796 (+) False G212656
TU241428 other downstream 618199 101482411 ~ 101486796 (+) True G212656
TU241453 other downstream 645548 101509760 ~ 101510842 (+) False G212674
TU241455 other downstream 645548 101509760 ~ 101516104 (+) True G212674
TU241479 other downstream 690173 101554385 ~ 101556370 (+) False G212690

Expression Profile