RNA id: TU240786


Basic Information

Item Value
RNA id TU240786
length 449
lncRNA type read_through
GC content 0.36
exon number 5
gene id G212190
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 101156265 ~ 101223344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagtagtgatacttcagctagagtagtgatacttcagctagaacagagtagtgatacttcagatagagaagtgatacttcagatagaacagagtagtgatatttcagatagaacagagtagtgatacttcagctagagtagtgatacttcagatagaacagagtagtgatacttcagatagaatagagtagtgataattcagatagaacagagtagtgatacttcagatagagtagtgatacttcagatagaacagagtagtgataCTTCAGatagagtagtgatacttcagatagaacagagtagtgatacttcagatagaacagagtagtgatacttcagatagaacagagtagtgatacttcagatagagtagtgatacttcagatagagtagtgatacttcagatagaacacagtagtgatacttcagatagaacagagtagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240725 lncRNA upstream 67330 101085251 ~ 101088935 (+) False G212149
TU240726 lncRNA upstream 67330 101085251 ~ 101088935 (+) True G212149
TU240710 lncRNA upstream 105675 101043078 ~ 101050590 (+) True G212136
TU240709 lncRNA upstream 122571 101033420 ~ 101033694 (+) True G212135
TU240703 lncRNA upstream 157410 100998223 ~ 100998855 (+) True G212129
TU241131 lncRNA downstream 9455 101232799 ~ 101233009 (+) True G212459
TU241135 lncRNA downstream 10520 101233864 ~ 101248990 (+) False G212463
TU241136 lncRNA downstream 10520 101233864 ~ 101268976 (+) True G212463
TU241138 lncRNA downstream 15144 101238488 ~ 101286537 (+) True G212464
TU241144 lncRNA downstream 15642 101238986 ~ 101239672 (+) True G212467
XM_036934544.1 mRNA upstream 191479 100929368 ~ 100964786 (+) True LOC110501031
XM_036934538.1 mRNA upstream 297003 100848174 ~ 100859262 (+) False LOC118936893
XM_036961073.1 mRNA upstream 307924 100785531 ~ 100848341 (+) True LOC110502612
XM_036961077.1 mRNA upstream 329995 100785531 ~ 100826270 (+) False LOC110502612
XM_036961124.1 mRNA upstream 500659 100638578 ~ 100655606 (+) True sigirr
XM_036961196.1 mRNA downstream 121941 101345285 ~ 101371174 (+) True best1
XM_036961212.1 mRNA downstream 411286 101634630 ~ 101695484 (+) True LOC110516669
XM_036934561.1 mRNA downstream 814694 102038038 ~ 102167821 (+) False LOC110502669
XM_036961240.1 mRNA downstream 961015 102184359 ~ 102238260 (+) True LOC110501421
XM_021578996.2 mRNA downstream 1038773 102262117 ~ 102278883 (+) True LOC110501429
TU240278 other upstream 688108 100467678 ~ 100468157 (+) True G211809
TU240232 other upstream 694284 100459657 ~ 100461981 (+) True G211779
TU239244 other upstream 1256388 99896619 ~ 99899877 (+) False LOC110500919
TU241421 other downstream 259067 101482411 ~ 101486796 (+) False G212656
TU241428 other downstream 259067 101482411 ~ 101486796 (+) True G212656
TU241453 other downstream 286416 101509760 ~ 101510842 (+) False G212674
TU241455 other downstream 286416 101509760 ~ 101516104 (+) True G212674
TU241479 other downstream 331041 101554385 ~ 101556370 (+) False G212690

Expression Profile