RNA id: TU241407


Basic Information

Item Value
RNA id TU241407
length 427
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G212645
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 101467814 ~ 101468240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTGGATGTGCTGCAGAGAGGGGCTGGGagacactgatttggttgtgatTCTCTGTAGTCTTCTCCGTCAGGCTCGGTTTGGATCTGTTCAGGTGTAGTACCGGGTCGAGTCtgtagtggaaatttcctgtatttaccaaatcatgagagcaaaccacacacaagtcagagttatcataaagtacatctttaattatatgagctccatcacaaccctgtgactctcagatcaattcagtgtctataaattaattctctgagagaccttacacattgcaactgagatcctttatagcaaagacacacatagccagacagcattggctataaattatcattcagctttgtctcctaaactatgttcttatctcgctctcaggttttgttttatggtcctatctcaacaggcatatatcaaatacaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241388 lncRNA upstream 1265 101464858 ~ 101466549 (+) False G212642
TU241389 lncRNA upstream 1265 101464858 ~ 101466549 (+) False G212642
TU241392 lncRNA upstream 1265 101464858 ~ 101466549 (+) True G212642
TU241382 lncRNA upstream 6460 101458843 ~ 101461354 (+) True G212637
TU241373 lncRNA upstream 11859 101455099 ~ 101455955 (+) True G212630
TU241408 lncRNA downstream 478 101468718 ~ 101468965 (+) True G212646
TU241412 lncRNA downstream 4694 101472934 ~ 101473178 (+) True G212650
TU241414 lncRNA downstream 6516 101474756 ~ 101474960 (+) True G212652
TU241416 lncRNA downstream 9298 101477538 ~ 101477750 (+) True G212654
TU241425 lncRNA downstream 13941 101482181 ~ 101486796 (+) False G212656
XM_036961196.1 mRNA upstream 96640 101345285 ~ 101371174 (+) True best1
XM_036934544.1 mRNA upstream 503028 100929368 ~ 100964786 (+) True LOC110501031
XM_036934538.1 mRNA upstream 608552 100848174 ~ 100859262 (+) False LOC118936893
XM_036961073.1 mRNA upstream 619473 100785531 ~ 100848341 (+) True LOC110502612
XM_036961077.1 mRNA upstream 641544 100785531 ~ 100826270 (+) False LOC110502612
XM_036961212.1 mRNA downstream 166390 101634630 ~ 101695484 (+) True LOC110516669
XM_036934561.1 mRNA downstream 569798 102038038 ~ 102167821 (+) False LOC110502669
XM_036961240.1 mRNA downstream 716119 102184359 ~ 102238260 (+) True LOC110501421
XM_021578996.2 mRNA downstream 793877 102262117 ~ 102278883 (+) True LOC110501429
XM_036961261.1 mRNA downstream 839257 102307497 ~ 102314434 (+) True LOC110501451
TU240278 other upstream 999657 100467678 ~ 100468157 (+) True G211809
TU240232 other upstream 1005833 100459657 ~ 100461981 (+) True G211779
TU239244 other upstream 1567937 99896619 ~ 99899877 (+) False LOC110500919
TU241421 other downstream 14171 101482411 ~ 101486796 (+) False G212656
TU241428 other downstream 14171 101482411 ~ 101486796 (+) True G212656
TU241453 other downstream 41520 101509760 ~ 101510842 (+) False G212674
TU241455 other downstream 41520 101509760 ~ 101516104 (+) True G212674
TU241479 other downstream 86145 101554385 ~ 101556370 (+) False G212690

Expression Profile