RNA id: TU241453


Basic Information

Item Value
RNA id TU241453
length 830
RNA type TUCP
GC content 0.52
exon number 2
gene id G212674
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 101509760 ~ 101516104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAAACTCCAGTTCTGAATCAGATGCACCAAATAGTTAATCACTCTGTTAATATGACTGTCTATTTAGTCCACGAGATTCTGCACACACTTCCCTGATGGCTGTGTCCTGGtgtgtcctggtgtatcctggctatgtccctggtgtatcctggctatgtccctggttatgtcctggtgtatcctggctatgtccctggtgtatcctggctatgtccctggtgtatcctggctatgtccctggtgtatcctggctatgtccctggtgtatcctggctatgtccctggtgtatcctggctatgtcctggtgtatcctggctatgtccctggtgtatcctgttgtatcctggctatgtccctggtgtatcctggctatgtccctggtgtatcctggtgtatcctggctatgtcctggtgtatcctggctatgtcctggtgtatcctggctatgtccctggtgtatcctggtgtatcctggctatgtccctggtgtatcctggctatgtcctggtgtatcctggctatgtcctggtgtatcctggctatgtcctggtgtatcctggctatgtccctggtatatcctggctatgtccctggtgtatcctggctatgtcctggtgtatcctggctatgtccctggtgtatcctggtgtatcctggctatgtccctggtgtatcctggtgtatcctggctatgtccctagtgtatcctggctatgtcctggtgtatcctggctatgtcctggtgtatcctggctctctccctggtgtatcctggcgaTGCCCTGGtatatcctggctatgtcctggtgtatcctggctatgtccc

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU241436 lncRNA upstream 16726 101491762 ~ 101493034 (+) True G212659
TU241437 lncRNA upstream 17129 101491887 ~ 101492631 (+) True G212660
TU241425 lncRNA upstream 22964 101482181 ~ 101486796 (+) False G212656
TU241419 lncRNA upstream 22964 101482411 ~ 101486796 (+) False G212656
TU241424 lncRNA upstream 22964 101482411 ~ 101486796 (+) False G212656
TU241446 lncRNA downstream 33316 101544158 ~ 101579963 (+) True G212668
TU241482 lncRNA downstream 43582 101554424 ~ 101559813 (+) False G212690
TU241476 lncRNA downstream 44967 101555809 ~ 101561158 (+) False G212690
TU241481 lncRNA downstream 44967 101555809 ~ 101561158 (+) True G212690
TU241485 lncRNA downstream 54328 101565170 ~ 101566409 (+) True G212693
XM_036961196.1 mRNA upstream 138586 101345285 ~ 101371174 (+) True best1
XM_036934544.1 mRNA upstream 544974 100929368 ~ 100964786 (+) True LOC110501031
XM_036934538.1 mRNA upstream 650498 100848174 ~ 100859262 (+) False LOC118936893
XM_036961073.1 mRNA upstream 661419 100785531 ~ 100848341 (+) True LOC110502612
XM_036961077.1 mRNA upstream 683490 100785531 ~ 100826270 (+) False LOC110502612
XM_036961212.1 mRNA downstream 123788 101634630 ~ 101695484 (+) True LOC110516669
XM_036934561.1 mRNA downstream 527196 102038038 ~ 102167821 (+) False LOC110502669
XM_036961240.1 mRNA downstream 673517 102184359 ~ 102238260 (+) True LOC110501421
XM_021578996.2 mRNA downstream 751275 102262117 ~ 102278883 (+) True LOC110501429
XM_036961261.1 mRNA downstream 796655 102307497 ~ 102314434 (+) True LOC110501451
TU241421 other upstream 22964 101482411 ~ 101486796 (+) False G212656
TU241428 other upstream 22964 101482411 ~ 101486796 (+) True G212656
TU240278 other upstream 1041603 100467678 ~ 100468157 (+) True G211809
TU240232 other upstream 1047779 100459657 ~ 100461981 (+) True G211779
TU239244 other upstream 1609883 99896619 ~ 99899877 (+) False LOC110500919
TU241479 other downstream 43543 101554385 ~ 101556370 (+) False G212690
TU241478 other downstream 43582 101554424 ~ 101555719 (+) False G212690
TU241742 other downstream 232057 101742899 ~ 101745974 (+) False G212863
TU241953 other downstream 666567 102177409 ~ 102177918 (+) True G213051
TU241958 other downstream 727461 102238303 ~ 102239540 (+) True G213055

Expression Profile

TU241453 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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TU241453 Expression in each Bioproject

Bar chart with 12 bars.
TU241453 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.