RNA id: TU241491


Basic Information

Item Value
RNA id TU241491
length 312
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G212699
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 101578661 ~ 101579068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtacctgtggctCAGGGGGAAACAGAGTTCTGGACACtctgtagaggtgtgtgtgtgtgtctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtacctgtggctCAGGGGGAAACAGAGCTCTGGACACtctgtagagGTTGGTGAGTGTAAACTGGATGGAGGTGTTGGTGAATCGTAGTTCATGCATGTTGGTGGATCGGTCTCTAGGGCAGATGTCACTCTCTCCAGAGAACGGAGACACAGTGATGGTATTCTTCAGTTCATACTGAGGCAGATTATCACTGATACCACCGTCCACGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241485 lncRNA upstream 12252 101565170 ~ 101566409 (+) True G212693
TU241476 lncRNA upstream 17503 101555809 ~ 101561158 (+) False G212690
TU241481 lncRNA upstream 17503 101555809 ~ 101561158 (+) True G212690
TU241482 lncRNA upstream 18848 101554424 ~ 101559813 (+) False G212690
TU241436 lncRNA upstream 85627 101491762 ~ 101493034 (+) True G212659
TU241503 lncRNA downstream 6112 101585180 ~ 101589863 (+) True G212705
TU241508 lncRNA downstream 19649 101598717 ~ 101599399 (+) False G212710
TU241509 lncRNA downstream 19649 101598717 ~ 101599399 (+) True G212710
TU241510 lncRNA downstream 27708 101606776 ~ 101607205 (+) False G212711
TU241511 lncRNA downstream 27708 101606776 ~ 101607584 (+) False G212711
XM_036961196.1 mRNA upstream 207487 101345285 ~ 101371174 (+) True best1
XM_036934544.1 mRNA upstream 613875 100929368 ~ 100964786 (+) True LOC110501031
XM_036934538.1 mRNA upstream 719399 100848174 ~ 100859262 (+) False LOC118936893
XM_036961073.1 mRNA upstream 730320 100785531 ~ 100848341 (+) True LOC110502612
XM_036961077.1 mRNA upstream 752391 100785531 ~ 100826270 (+) False LOC110502612
XM_036961212.1 mRNA downstream 55562 101634630 ~ 101695484 (+) True LOC110516669
XM_036934561.1 mRNA downstream 458970 102038038 ~ 102167821 (+) False LOC110502669
XM_036961240.1 mRNA downstream 605291 102184359 ~ 102238260 (+) True LOC110501421
XM_021578996.2 mRNA downstream 683049 102262117 ~ 102278883 (+) True LOC110501429
XM_036961261.1 mRNA downstream 728429 102307497 ~ 102314434 (+) True LOC110501451
TU241479 other upstream 22291 101554385 ~ 101556370 (+) False G212690
TU241478 other upstream 22942 101554424 ~ 101555719 (+) False G212690
TU241455 other upstream 62557 101509760 ~ 101516104 (+) True G212674
TU241453 other upstream 67819 101509760 ~ 101510842 (+) False G212674
TU241421 other upstream 91865 101482411 ~ 101486796 (+) False G212656
TU241742 other downstream 163831 101742899 ~ 101745974 (+) False G212863
TU241953 other downstream 598341 102177409 ~ 102177918 (+) True G213051
TU241958 other downstream 659235 102238303 ~ 102239540 (+) True G213055
TU242123 other downstream 935139 102514207 ~ 102516302 (+) True G213185
TU242175 other downstream 1016463 102595531 ~ 102599866 (+) True G213221

Expression Profile