RNA id: TU241899


Basic Information

Item Value
RNA id TU241899
length 304
lncRNA type intronic
GC content 0.47
exon number 4
gene id G212999
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 102040231 ~ 102040770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taccagtactgaggcgatgtgctggggtacgaggtaataacatgactatatacagggagtaccagtactgagtcaatgtgcagtggtatgaggtaataacatgactatatacagggagtaccagtactgagtcgatgtgctggggtactaggtaataacatgactatatacagggagtaccagtactgagtcgatgtgctggggtacgaggtaataacatgtctatataaagggagtaccagtactgaggcgatgtgcaggggtacgaggtaataacatgtctatataaagggagtaccagtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241855 lncRNA upstream 61493 101978477 ~ 101978738 (+) True G212958
TU241783 lncRNA upstream 181429 101858563 ~ 101858802 (+) True G212898
TU241770 lncRNA upstream 191178 101848624 ~ 101849053 (+) True G212885
TU241756 lncRNA upstream 202583 101837429 ~ 101837648 (+) True G212872
TU241754 lncRNA upstream 204440 101835581 ~ 101835791 (+) True G212870
TU241933 lncRNA downstream 76586 102117356 ~ 102118240 (+) True G213031
TU241892 lncRNA downstream 124557 102165327 ~ 102166756 (+) True LOC110502669
TU241952 lncRNA downstream 135441 102176211 ~ 102176457 (+) True G213050
TU241967 lncRNA downstream 153219 102193989 ~ 102199459 (+) True G213064
TU241969 lncRNA downstream 158824 102199594 ~ 102199929 (+) True G213065
XM_036961212.1 mRNA upstream 344747 101634630 ~ 101695484 (+) True LOC110516669
XM_036961196.1 mRNA upstream 669057 101345285 ~ 101371174 (+) True best1
XM_036934544.1 mRNA upstream 1075445 100929368 ~ 100964786 (+) True LOC110501031
XM_036934538.1 mRNA upstream 1180969 100848174 ~ 100859262 (+) False LOC118936893
XM_036961073.1 mRNA upstream 1191890 100785531 ~ 100848341 (+) True LOC110502612
XM_036961240.1 mRNA downstream 143589 102184359 ~ 102238260 (+) True LOC110501421
XM_021578996.2 mRNA downstream 221347 102262117 ~ 102278883 (+) True LOC110501429
XM_036961261.1 mRNA downstream 266727 102307497 ~ 102314434 (+) True LOC110501451
XM_036934571.1 mRNA downstream 559848 102600618 ~ 102608333 (+) True LOC118936918
XM_036961282.1 mRNA downstream 642052 102682822 ~ 102721240 (+) False slc24a1
TU241742 other upstream 294257 101742899 ~ 101745974 (+) False G212863
TU241479 other upstream 483861 101554385 ~ 101556370 (+) False G212690
TU241478 other upstream 484512 101554424 ~ 101555719 (+) False G212690
TU241455 other upstream 524127 101509760 ~ 101516104 (+) True G212674
TU241453 other upstream 529389 101509760 ~ 101510842 (+) False G212674
TU241953 other downstream 136639 102177409 ~ 102177918 (+) True G213051
TU241958 other downstream 197533 102238303 ~ 102239540 (+) True G213055
TU242123 other downstream 473437 102514207 ~ 102516302 (+) True G213185
TU242175 other downstream 554761 102595531 ~ 102599866 (+) True G213221
TU242668 other downstream 638605 102679375 ~ 102680096 (+) True G213645

Expression Profile