RNA id: TU244046


Basic Information

Item Value
RNA id TU244046
length 435
RNA type TUCP
GC content 0.48
exon number 2
gene id LOC118964342
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63916 ~ 74553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCACAGCTGATGTGGAAACGTTCAGAGGATCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCACTGGAAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGTGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCActgggagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATATCACTACCACTAAACATCAGACTCACTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243988 lncRNA downstream 18066 46388 ~ 52028 (-) True G214545
TU243979 lncRNA downstream 19710 41654 ~ 50384 (-) False G214545
TU243992 lncRNA downstream 35007 29481 ~ 35087 (-) True G214549
TU244069 lncRNA upstream 33470 108021 ~ 108619 (-) True G214597
TU244071 lncRNA upstream 34803 109354 ~ 110345 (-) True G214599
TU244084 lncRNA upstream 49554 124105 ~ 124816 (-) False G214609
TU244085 lncRNA upstream 49554 124105 ~ 125144 (-) True G214609
TU244091 lncRNA upstream 50778 125329 ~ 125719 (-) True G214614
XM_036965278.1 mRNA upstream 73189 147740 ~ 155571 (-) True irx4a
XR_005040024.1 mRNA upstream 174487 249038 ~ 250513 (-) False LOC118944729
XR_005040030.1 mRNA upstream 174487 249038 ~ 250513 (-) False LOC118944729
XR_005040023.1 mRNA upstream 174487 249038 ~ 250548 (-) False LOC118944729
XM_036965290.1 mRNA upstream 436416 510967 ~ 515209 (-) True irx2a
TU244156 other upstream 103172 177723 ~ 179591 (-) False G214663
TU244157 other upstream 103172 177723 ~ 178387 (-) False G214663
TU244160 other upstream 103172 177723 ~ 179591 (-) True G214663
TU244568 other upstream 406496 481047 ~ 481609 (-) True G214982
TU245090 other upstream 841408 915959 ~ 919673 (-) True G215354

Expression Profile