RNA id: XM_036975417.1


Basic Information

Item Value
RNA id XM_036975417.1
length 843
RNA type mRNA
GC content 0.63
exon number 2
gene id LOC118964343
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 195431 ~ 196516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgcacatCCTTGCTTTAGTTCCTGAGTCCGCCTCCACCCCATCTCTATCCAAGCCCCATCAACCTCTATCCCAGCCCCAGCACCAGCCCCACCCCATCTCTACCCACCCCACAACTACCCCAGTCCCACTCCACCAACCTCTACCCCAGTCCCACTCCACCCACCCTCTACCCCAGTCCCACTCCACCCACTTCTACCCCAGTCCACCTCCACCCACCTCTACCCCAGTCCCACTCCATCCACCTCGACCCCAGTCCACCTCCACCCACCTCTATCCCAGTCCACCTCCACCCACCTCTACCCCAGTCCACCGCCACCCACCTCTACCCCATTCCCACCCCACCCACCTCTACCCCAGTCCACCTCCACCCACCTCTACTCCAGTCCACCTCCACCCACCTCTACCCCAGTCCCGTTCCACCCACCTCTACCCCAGTCCCACTCCACCCACCTCTACCCCAGTCCCACTCCACCCACCTCTACCCCAGTCCACCTCCACCCACCTCTACCCCAGTCCCACTCCCACCAACCTCTACCCCAGTCCCACTCCACCCACCTCTACCCCAGTCCCCCTCCACCAACCTCTACCCCAGGCCCACTCCACCCACCTCTACCCCAGTCCcactccacccacccacctctatcccagtcccagtcccactccacCAACCTCTAATCCCAGTCCCACTCCACCCACCTCTACCCCAGTCCCCCTCCACCCACCTCTACCCCAGTCccactccaccctctccaccgCTATGCCagtcccctttcccttccccttcCACTCCACCTCAACCCCAATCTACTTCCCCTGTCCATTAACATCATGTGTCCATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244163 lncRNA upstream 14094 181033 ~ 181337 (+) True G214665
TU244153 lncRNA upstream 19598 175631 ~ 175833 (+) True G214660
TU244104 lncRNA upstream 58335 136597 ~ 137096 (+) True G214626
TU244088 lncRNA upstream 67972 126495 ~ 127459 (+) True G214612
TU244070 lncRNA upstream 82773 111380 ~ 112658 (+) True G214598
TU244187 lncRNA downstream 1688 198204 ~ 198452 (+) True G214685
TU244238 lncRNA downstream 50642 247158 ~ 251869 (+) True G214717
TU244252 lncRNA downstream 83798 280314 ~ 281924 (+) True G214727
TU244353 lncRNA downstream 119928 316444 ~ 316703 (+) True G214802
TU244360 lncRNA downstream 128020 324536 ~ 325192 (+) True G214809
XM_036975418.1 mRNA downstream 17224 213740 ~ 216403 (+) True LOC118964344
XM_036965307.1 mRNA downstream 744047 940563 ~ 944831 (+) True irx1a
XR_005039802.1 mRNA downstream 928801 1125317 ~ 1128772 (+) False LOC118944464
XR_005040035.1 mRNA downstream 1110491 1307007 ~ 1309337 (+) True LOC118944732
XR_005040036.1 mRNA downstream 1339363 1535879 ~ 1538143 (+) True LOC118944733
TU244628 other downstream 319844 516360 ~ 518187 (+) True G215012
TU245231 other downstream 887926 1084442 ~ 1086530 (+) True G215455
TU245689 other downstream 1326753 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 1413122 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 1439082 1635598 ~ 1680107 (+) False LOC118944469