RNA id: XR_005040023.1


Basic Information

Item Value
RNA id XR_005040023.1
length 1233
RNA type mRNA
GC content 0.37
exon number 3
gene id LOC118944729
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 247153 ~ 252277 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaggtactggaggactatTATTCTAGAGGTACAGGAGGACTATTATACTAGAGGTACAAGAggactattatactagagacactaGAGGACTATTATTCTAGAGGTACAGGAGGACTATGATACTAGAGACACTAAAGGACTATTATACTAGAGGTACAGGAGGACTATTATACTAGAGGTACAGTAGGACTATTATTCTAGAGGTACAGGAggactattatactagagacactagaggactattatactagagacactagaggactattatactagagacactaGAGGACTATTCtactagagagactagaggacTATTatattagagacactagaggactattatactagagacactaGAGGACTATTATACTAGAGGTATAGGAGGACTATTTAATTATAGGTACAGGAGGACTATTATACTAGAGGTACTGTGTGACTATTATTCTAGAGATACTAGAGGACTATATACTAGAAAGACTAGTGGACTATTTCACTAGAGACACTAGAGGACTATCATACTAGAGGTACAGGAGGACTATTATACTAGAGGTAAAGGAGGAATATTATACTAGAGCTACAGGAGGACTAATATACTAGAGACACTAGAGGACTATTATACTAGAGAGACTAGTGGACTTTATACTAGAGACACTAGAGGACTATTATACTAGAGGTACAGGAGGACTATTATACTAGACACACTAGAGGACTATTATTCTAGAGGTACAGGAggactattatactagagacactagaggactattatactagagacactagaggactattatactagagacactaGAGGACTATTACACTAAAGACACTAGAGAACTATTATACTAGCGGTACAGGAGGACTATCATACTAGAGGTACAGGAGGACTATTATACTAGAGACACTAGAGGACTATTATACTAGACGTACAGGAGGACTATTATTCTAGAGACACTAGAGGACTATTAtactagagagactagaggacTATTATTCTAGAGACACTAGAGGACTATTATTTTAGAGGTACATGAGAACTATTATACTAGAGGTATAGGAGGACTATTATACTAGAGCCACTAGAGGAATATTATTCTAGAGACATTAGAGGGCTATTATACTAGAGGTACAGGAggactattatactagagacactaGAGGACTATTATACTAGAGGTACAGGATGCCTATAATACTAGAGGTATAGGAGGACTATTATACTAGAGCCACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244194 lncRNA downstream 40793 207667 ~ 208245 (-) True G214690
TU244137 lncRNA downstream 84174 164644 ~ 164864 (-) True G214651
TU244105 lncRNA downstream 112009 136792 ~ 137029 (-) True G214627
TU244093 lncRNA downstream 119832 125848 ~ 129206 (-) True G214615
TU244091 lncRNA downstream 123319 125329 ~ 125719 (-) True G214614
TU244322 lncRNA upstream 28611 279159 ~ 281422 (-) True G214774
TU244326 lncRNA upstream 37509 288057 ~ 288680 (-) True G214778
TU244332 lncRNA upstream 44126 294674 ~ 301202 (-) True G214783
TU244434 lncRNA upstream 128155 378703 ~ 380379 (-) True G214876
TU244449 lncRNA upstream 149411 399959 ~ 400233 (-) True G214890
XM_036965278.1 mRNA downstream 93467 147740 ~ 155571 (-) True irx4a
XM_036975416.1 mRNA downstream 174485 63916 ~ 74553 (-) False LOC118964342
XM_036965290.1 mRNA upstream 260419 510967 ~ 515209 (-) True irx2a
XM_036975420.1 mRNA upstream 628452 879000 ~ 881031 (-) True LOC118964345
XM_036965348.1 mRNA upstream 1321129 1571677 ~ 1581702 (-) False LOC118936608
XR_005040037.1 mRNA upstream 1323816 1574364 ~ 1575575 (-) True LOC118944736
XM_036965320.1 mRNA upstream 1332568 1583116 ~ 1593615 (-) False LOC118944735
TU244156 other downstream 69447 177723 ~ 179591 (-) False G214663
TU244160 other downstream 69447 177723 ~ 179591 (-) True G214663
TU244157 other downstream 70651 177723 ~ 178387 (-) False G214663
TU244046 other downstream 174487 70094 ~ 74551 (-) True LOC118964342
TU244568 other upstream 230499 481047 ~ 481609 (-) True G214982
TU245090 other upstream 665411 915959 ~ 919673 (-) True G215354
TU245901 other upstream 1349678 1600226 ~ 1618140 (-) True G215950
TU245911 other upstream 1408532 1659080 ~ 1682022 (-) True G215956
TU245913 other upstream 1411141 1661689 ~ 1663067 (-) False LOC110519742

Expression Profile