RNA id: XM_036975420.1


Basic Information

Item Value
RNA id XM_036975420.1
length 1773
RNA type mRNA
GC content 0.70
exon number 4
gene id LOC118964345
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 879000 ~ 881031 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGAAAGCTGGGAGGACCCACCAAAGGCTCAGAGATCAGGGATAATCTGACACCCCAAAGCCTAATCTTCTTAGTGGACCAGGATAAGATGACCCCCTACATACCCACCCCCCCAGCCCCCTCCATACCCACCTCCACCAATCCCCCCCAGCCCCCTCCATACCCACCCCCACCAGTCCCCTCCATACCCACCACCACCAGTCCCCTCAATACCCACCCCCCCAGCCCCCTCCATACCCACCTCCACCAGTCCCCCCCAGCCCCCTCCATACCCACACCCACCAGTCCCCTCCATACCCACCACCACCAGTCCCCTCCATACCCACCCCCACCAGCCCCCTCCATACCCACCCCCACCAGTCCCCTCCATACCAACCCCCACCAGTCCCCTCCATACCCACCCCAACTAGCCCCCTCCATACCCACCCCCACCAGCCCCCTCCCAGTCCCCCCAGCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCCTCCATACCCACCCCCACCAGCACCCTCCATACCCACCCCCACCAGCCCCCTCTCATCCCCTCCATACCCACCCCCACCAGTCTCCTCCATACCCACCCCCACCAGCCCCCCCAGCCCCCTCCATACCCACCCACACCAGCCCCTCCATACCCACCCCCACCAGCCCCCTCCATACCCACCCCAAATAGCCCCCTCCATACCCACCCCCACCAGTCCCCTCCATACCCACCCCCACCAGTCCCCTCCATACCCACCCCCACCAGCCCCCCCCAGCCCCCTCCATACCCACCCCCACCAGCCCCCTCCATACCCACCCCCACCAGTCCCCCCAGCCCCATCCTGGCTCCACCCAGCCCCTCCTGGCCCCACCCAGTCCTTCCAGCCCCCTCCTGGCCCCACCCAGTCTTACCAGCCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCCTCCTGGCCCCTCCCAGTCCCCCCAGCCCCATCCTGGCTCCACCCAGCCCCATCCTGGCTCCACCCAGCCCCATCCTGGCTCCACCCAGCCCCTCCTGGCCCCACCCAGTCCTTCCAGCCCCCTCCATACCTACCCCCACCATTCCCCTCCCAGTCCCACCAGTCCCATCCTGGCTCCACCCAAACCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCTTCCTGGCCCCTTCCAGCCCCCCCCACCAGCCCCCTCCCAGTCCCCCCAGCCCCATCCTGGCTCCACCCAGCCCCTCCTGGCCCCACCCAGTCCTTCCAGCTCCCTCCTGGCCCCACCCAGTCTTACCAGCCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCTTCCTGGCCCCTCCCAGCCCCCCCCACCAGCCCCATCCTGGCTCCACCCAGCCCCTCCTGGCCCCACCCAGTCCTTCCAGCCCCCTCCTGGCCCCACCCAGTCTTACCAGCCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCTTCCTGGCCCCTCCCAGCCCCCCCCACCAGCCCCATCCTGGCTCCACCCAGCCCCTCCTGGCCCCACCCAGTCCTTCCAGCCCCCTCCTGTCCCACCAGCCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCTTCCTGGCCCCTCCCAGCCCCCCCCACCAGCCCCTTCCTGGCCCCTCCCTCCCAGCACCATGTCCCTCTGATAGCCATTTTAGCCAGCATGGAGACAATGGCCTGGTCCGGGACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245009 lncRNA downstream 17372 861312 ~ 861628 (-) True G215297
TU244959 lncRNA downstream 49032 829254 ~ 829968 (-) True G215265
TU244956 lncRNA downstream 50452 828145 ~ 828548 (-) True G215263
TU244938 lncRNA downstream 92342 786231 ~ 786658 (-) True G215246
TU244933 lncRNA downstream 95962 782412 ~ 783038 (-) True G215241
TU245038 lncRNA upstream 6366 887397 ~ 889458 (-) True G215316
TU245108 lncRNA upstream 55136 936167 ~ 936552 (-) True G215364
TU245129 lncRNA upstream 56032 937063 ~ 995851 (-) False G215384
TU245156 lncRNA upstream 99643 980674 ~ 981454 (-) True G215402
TU245128 lncRNA upstream 112909 993940 ~ 995851 (-) True G215384
XM_036965290.1 mRNA downstream 363791 510967 ~ 515209 (-) True irx2a
XR_005040023.1 mRNA downstream 628452 249038 ~ 250548 (-) False LOC118944729
XR_005040024.1 mRNA downstream 628487 249038 ~ 250513 (-) False LOC118944729
XR_005040030.1 mRNA downstream 628487 249038 ~ 250513 (-) False LOC118944729
XM_036965278.1 mRNA downstream 723429 147740 ~ 155571 (-) True irx4a
XM_036965348.1 mRNA upstream 690646 1571677 ~ 1581702 (-) False LOC118936608
XR_005040037.1 mRNA upstream 693333 1574364 ~ 1575575 (-) True LOC118944736
XM_036965320.1 mRNA upstream 702085 1583116 ~ 1593615 (-) False LOC118944735
XM_036965332.1 mRNA upstream 702085 1583116 ~ 1593615 (-) True LOC118944735
XR_005040038.1 mRNA upstream 726010 1607041 ~ 1609598 (-) True LOC118944737
TU244568 other downstream 397391 481047 ~ 481609 (-) True G214982
TU244156 other downstream 699409 177723 ~ 179591 (-) False G214663
TU244160 other downstream 699409 177723 ~ 179591 (-) True G214663
TU244157 other downstream 700613 177723 ~ 178387 (-) False G214663
TU244046 other downstream 804449 70094 ~ 74551 (-) True LOC118964342
TU245090 other upstream 34928 915959 ~ 919673 (-) True G215354
TU245901 other upstream 719195 1600226 ~ 1618140 (-) True G215950
TU245911 other upstream 778049 1659080 ~ 1682022 (-) True G215956
TU245913 other upstream 780658 1661689 ~ 1663067 (-) False LOC110519742
TU245915 other upstream 1045713 1926744 ~ 1952588 (-) True LOC110516567

Expression Profile