RNA id: TU245257


Basic Information

Item Value
RNA id TU245257
length 187
lncRNA type sense_over
GC content 0.45
exon number 3
gene id LOC118944464
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1125317 ~ 1130309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Tctaatataatactgatatacagggtggtagtggaggtctaatataatactgatatacagggtggaggtctaatataatactgatatacagggtggtagtggaggtctaatataatactgatatacagggtggtagtggaggtctaatataatactgatatacagggtggaggtctaatataatact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245254 lncRNA upstream 582 1125327 ~ 1126525 (+) False LOC118944464
TU245243 lncRNA upstream 17266 1109446 ~ 1109841 (+) True G215463
TU245225 lncRNA upstream 55012 1071400 ~ 1072095 (+) True G215452
TU245220 lncRNA upstream 60984 1064180 ~ 1066123 (+) False G215448
TU245221 lncRNA upstream 60984 1065393 ~ 1066123 (+) True G215448
TU245279 lncRNA downstream 24069 1154378 ~ 1155885 (+) True G215491
TU245324 lncRNA downstream 134238 1264547 ~ 1265314 (+) True G215528
TU245327 lncRNA downstream 155487 1285796 ~ 1286520 (+) True G215531
TU245348 lncRNA downstream 180045 1310354 ~ 1311062 (+) True G215544
TU245376 lncRNA downstream 229073 1359382 ~ 1361280 (+) True G215555
XM_036965307.1 mRNA upstream 182276 940563 ~ 944831 (+) True irx1a
XM_036975418.1 mRNA upstream 910704 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 930591 195431 ~ 196516 (+) True LOC118964343
XR_005040035.1 mRNA downstream 176698 1307007 ~ 1309337 (+) True LOC118944732
XR_005040036.1 mRNA downstream 405570 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 414948 1545257 ~ 1567659 (+) True LOC118964346
XM_036965368.1 mRNA downstream 479395 1609704 ~ 1611504 (+) True LOC118944738
XM_036963971.1 mRNA downstream 485237 1615546 ~ 1618046 (+) True LOC118944466
TU245231 other upstream 40577 1084442 ~ 1086530 (+) True G215455
TU244628 other upstream 608920 516360 ~ 518187 (+) True G215012
TU245689 other downstream 392960 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 479329 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 505289 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other downstream 511342 1641651 ~ 1680107 (+) True LOC118944469
TU245758 other downstream 540102 1670411 ~ 1747282 (+) True G215830

Expression Profile