RNA id: XR_005040037.1


Basic Information

Item Value
RNA id XR_005040037.1
length 1061
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC118944736
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1574364 ~ 1575575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACTCAGTCCTGGGGGACGTCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGGACGTCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGGATATAAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGGACGTCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTAGGGGACGTCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGGACGTCAATGCTATTGTCAAGCAGGTAACACAACTCAGACCTGGGGGATATCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGGACGTCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGAAATCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGGATATCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGGACGTCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGGATATCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGGACGTCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTAGGGGACGTCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGGACGTCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTAGGGGACGTCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGGACGTCAATGCTAATGTCAAGCAGGTAACACAACTCAGTCCTAGGGGACGTCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTAGGGGACGTCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGGATATCAATGCTATTGTCAAGCAGGTAACACAACTCAGTCCTGGGGGACGTCAATGCTATTGTCAAGCAGGCATCTAATATGTGCCCCATatctgtatgttactgtattgcTGGGTCCTGGTGGTATGCACAGTGGtctgtatttacagtgcatttaaCAAGTCTCAATAca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245720 lncRNA downstream 40438 1523294 ~ 1533926 (-) False G215806
TU245721 lncRNA downstream 40438 1532900 ~ 1533926 (-) True G215806
TU245724 lncRNA downstream 43374 1521400 ~ 1530990 (-) True G215807
TU245717 lncRNA downstream 56159 1491111 ~ 1518205 (-) True G215804
TU245732 lncRNA upstream 6405 1581980 ~ 1582274 (-) True G215813
TU245896 lncRNA upstream 19743 1595318 ~ 1676448 (-) True G215946
TU245903 lncRNA upstream 55206 1630781 ~ 1631524 (-) False G215951
TU245905 lncRNA upstream 55206 1630781 ~ 1642993 (-) True G215951
TU245909 lncRNA upstream 69579 1645154 ~ 1719959 (-) True G215954
XM_036975420.1 mRNA downstream 693333 879000 ~ 881031 (-) True LOC118964345
XM_036965290.1 mRNA downstream 1059155 510967 ~ 515209 (-) True irx2a
XR_005040023.1 mRNA downstream 1323816 249038 ~ 250548 (-) False LOC118944729
XR_005040024.1 mRNA downstream 1323851 249038 ~ 250513 (-) False LOC118944729
XM_036965320.1 mRNA upstream 7541 1583116 ~ 1593615 (-) False LOC118944735
XM_036965332.1 mRNA upstream 7541 1583116 ~ 1593615 (-) True LOC118944735
XR_005040038.1 mRNA upstream 31466 1607041 ~ 1609598 (-) True LOC118944737
XM_036965374.1 mRNA upstream 86085 1661660 ~ 1673583 (-) False LOC110519742
XM_036965376.1 mRNA upstream 86085 1661660 ~ 1673583 (-) False LOC110519742
TU245090 other downstream 654691 915959 ~ 919673 (-) True G215354
TU244568 other downstream 1092755 481047 ~ 481609 (-) True G214982
TU244156 other downstream 1394773 177723 ~ 179591 (-) False G214663
TU245901 other upstream 24651 1600226 ~ 1618140 (-) True G215950
TU245911 other upstream 83505 1659080 ~ 1682022 (-) True G215956
TU245913 other upstream 86114 1661689 ~ 1663067 (-) False LOC110519742
TU245915 other upstream 351169 1926744 ~ 1952588 (-) True LOC110516567
TU246015 other upstream 482340 2057915 ~ 2058429 (-) True G216038