RNA id: XM_036963978.1


Basic Information

Item Value
RNA id XM_036963978.1
length 1885
RNA type mRNA
GC content 0.69
exon number 5
gene id LOC118944468
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1630106 ~ 1637552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacacagactattttcatgatcatgggaggtgtgagagaattgctgctcgttgtgatgactgtgggggttgtcaaagtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagagctgtcatcaaatgaCGTCTCCATTGTGCATGCCCTGGCCTTGCTCCGATCCATAGGGTCTGACGCTAAACAAGCCAGAGAAGAGTATTTAGAGACCAATGAAGTAGAATCCCAAGCTTCTCCAAACCATGGTAGCTCTCCGGCAAATGATGCCCTGTCCTCTGAGGAGAAGCTGAGGCGCATGTCCTcggacgacgccacctctgacgctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgcgcatgtcctcggacgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccatggatatctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245701 lncRNA upstream 53076 1489352 ~ 1577030 (+) False G215792
TU245694 lncRNA upstream 94969 1494635 ~ 1535137 (+) False G215792
TU245683 lncRNA upstream 96184 1494635 ~ 1533922 (+) False G215792
TU245686 lncRNA upstream 99106 1491120 ~ 1531000 (+) False G215792
TU245695 lncRNA upstream 99106 1522163 ~ 1531000 (+) False G215792
TU245755 lncRNA downstream 21672 1659224 ~ 1682030 (+) True G215828
TU245776 lncRNA downstream 181870 1819422 ~ 1825947 (+) False LOC118944761
TU245775 lncRNA downstream 187614 1825166 ~ 1825947 (+) True LOC118944761
TU245792 lncRNA downstream 285757 1923309 ~ 2021561 (+) True G215853
TU245835 lncRNA downstream 376315 2013867 ~ 2014326 (+) True G215894
XM_036975422.1 mRNA upstream 3816 1622157 ~ 1626290 (+) True LOC118964347
XM_036963971.1 mRNA upstream 12060 1615546 ~ 1618046 (+) True LOC118944466
XM_036965368.1 mRNA upstream 18602 1609704 ~ 1611504 (+) True LOC118944738
XM_036975421.1 mRNA upstream 62447 1545257 ~ 1567659 (+) True LOC118964346
XR_005040036.1 mRNA upstream 91963 1535879 ~ 1538143 (+) True LOC118944733
XM_036963990.1 mRNA downstream 4135 1641687 ~ 1644356 (+) False LOC118944469
XM_036975423.1 mRNA downstream 16012 1653564 ~ 1660969 (+) True LOC110512625
XM_036965454.1 mRNA downstream 52206 1689758 ~ 1691571 (+) True LOC118944750
XM_036965438.1 mRNA downstream 58161 1695713 ~ 1697610 (+) True LOC118944749
XM_036965430.1 mRNA downstream 64204 1701756 ~ 1704997 (+) True LOC118944747
TU245742 other upstream 13727 1609638 ~ 1616379 (+) True G215820
TU245689 other upstream 96025 1523269 ~ 1534081 (+) True G215792
TU245231 other upstream 543576 1084442 ~ 1086530 (+) True G215455
TU244628 other upstream 1111919 516360 ~ 518187 (+) True G215012
TU245748 other downstream 4099 1641651 ~ 1680107 (+) True LOC118944469
TU245758 other downstream 32859 1670411 ~ 1747282 (+) True G215830
TU245773 other downstream 166836 1804388 ~ 1805255 (+) True G215843
TU245816 other downstream 323316 1960868 ~ 1966052 (+) False ahr1a
TU245815 other downstream 347431 1984983 ~ 1985796 (+) True ahr1a

Expression Profile