RNA id: XM_036963990.1


Basic Information

Item Value
RNA id XM_036963990.1
length 2224
RNA type mRNA
GC content 0.63
exon number 4
gene id LOC118944469
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1635598 ~ 1680107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgatcatgggaggtgtgagagaattgctgctcgttgtgatgactgtgggggttgtcaaagtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagagctgtcatcaaatgacgtctccattgtgcatgccctggccttgctccgatccatagggtctgacgctaaacaagccagagaagagtatttagagaccaatgaagtagaatcccaagcttctccaaaccatggtagctctccggcaaatgatgccctgtcctctgaggagaagctgaggcgcatgtcctcggacgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccaccgctgaagctgcgaccggcccgtctggcgacgacgccaccgctgaagctgcgaccggcccgtctggcgacgacgccaccgctgaagctgcgaccggcccgtctggcgacgacgccaccgctgaagctgcgaccggcccgtctggcgacgacgccaccgctgaagctgcgaccggcccgtctggcgacgacgccaccgctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccatggatatctgacgtgggacatgcaagagttcatgggtactctagtccagtgtgtaactgcatttgcttgttttggctcaattaaacattaactgtaatacttgtgtcctctgtattgttttggtggttCCTACTTGGAGTTGAGGTGTATGACCTGACTTGAGTAACTGGGGTGATGGCAACATTAGTTTTGCATTATATCCATGCGCCAGCAATATTACTCAGACCCCTGTGTTTTAAATTACCAATTGACTTAAGCTACATGTGCTCACTGTTGGTCCATTTATGCTAGTAGCATCACATGATACCTCAACAGCATTTTgacgccatttccggtcacaacttgcagacttgttgcggtgttttgttgcctactttgctacatgacaactttacggtttttactttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245701 lncRNA upstream 64657 1489352 ~ 1577030 (+) False G215792
TU245694 lncRNA upstream 106550 1494635 ~ 1535137 (+) False G215792
TU245683 lncRNA upstream 107765 1494635 ~ 1533922 (+) False G215792
TU245686 lncRNA upstream 110687 1491120 ~ 1531000 (+) False G215792
TU245695 lncRNA upstream 110687 1522163 ~ 1531000 (+) False G215792
TU245755 lncRNA downstream 14868 1659224 ~ 1682030 (+) True G215828
TU245776 lncRNA downstream 175066 1819422 ~ 1825947 (+) False LOC118944761
TU245775 lncRNA downstream 180810 1825166 ~ 1825947 (+) True LOC118944761
TU245792 lncRNA downstream 278953 1923309 ~ 2021561 (+) True G215853
TU245835 lncRNA downstream 369511 2013867 ~ 2014326 (+) True G215894
XM_036963978.1 mRNA upstream 4135 1630106 ~ 1637552 (+) True LOC118944468
XM_036975422.1 mRNA upstream 15397 1622157 ~ 1626290 (+) True LOC118964347
XM_036963971.1 mRNA upstream 23641 1615546 ~ 1618046 (+) True LOC118944466
XM_036965368.1 mRNA upstream 30183 1609704 ~ 1611504 (+) True LOC118944738
XM_036975421.1 mRNA upstream 74028 1545257 ~ 1567659 (+) True LOC118964346
XM_036975423.1 mRNA downstream 9208 1653564 ~ 1660969 (+) True LOC110512625
XM_036965454.1 mRNA downstream 45402 1689758 ~ 1691571 (+) True LOC118944750
XM_036965438.1 mRNA downstream 51357 1695713 ~ 1697610 (+) True LOC118944749
XM_036965430.1 mRNA downstream 57400 1701756 ~ 1704997 (+) True LOC118944747
XM_036965416.1 mRNA downstream 64752 1709108 ~ 1717917 (+) True LOC118944744
TU245742 other upstream 25308 1609638 ~ 1616379 (+) True G215820
TU245689 other upstream 107606 1523269 ~ 1534081 (+) True G215792
TU245231 other upstream 555157 1084442 ~ 1086530 (+) True G215455
TU244628 other upstream 1123500 516360 ~ 518187 (+) True G215012
TU245758 other downstream 26055 1670411 ~ 1747282 (+) True G215830
TU245773 other downstream 160032 1804388 ~ 1805255 (+) True G215843
TU245816 other downstream 316512 1960868 ~ 1966052 (+) False ahr1a
TU245815 other downstream 340627 1984983 ~ 1985796 (+) True ahr1a
TU246414 other downstream 816861 2461217 ~ 2462744 (+) True G216353

Expression Profile