RNA id: TU245747


Basic Information

Item Value
RNA id TU245747
length 453
RNA type TUCP
GC content 0.53
exon number 5
gene id LOC118944469
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1635598 ~ 1680107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaagacattacctgttgataacacagactattttcatgatcatgggaggtgtgagagaattgctgctcgttgtaatgactgtgggggttgtcaaagtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagagctgtcatcaaatgacgtctccattgtgcatgccctggccttgctccgatccatagggtctgacgctaaacaagccagagaagagtatttagagaccaatgaagtagaatcccaagcttctccaaaccatggtagctctccggcaaatgatgccctgtcctctgaggagaagctgaggcgcatgtcctcggacgacgccgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245701 lncRNA upstream 58568 1489352 ~ 1577030 (+) False G215792
TU245694 lncRNA upstream 100461 1494635 ~ 1535137 (+) False G215792
TU245683 lncRNA upstream 101676 1494635 ~ 1533922 (+) False G215792
TU245686 lncRNA upstream 104598 1491120 ~ 1531000 (+) False G215792
TU245695 lncRNA upstream 104598 1522163 ~ 1531000 (+) False G215792
TU245776 lncRNA downstream 139315 1819422 ~ 1825947 (+) False LOC118944761
TU245775 lncRNA downstream 145059 1825166 ~ 1825947 (+) True LOC118944761
TU245792 lncRNA downstream 243202 1923309 ~ 2021561 (+) True G215853
TU245835 lncRNA downstream 333760 2013867 ~ 2014326 (+) True G215894
TU245841 lncRNA downstream 342978 2023085 ~ 2023300 (+) True G215900
XM_036975422.1 mRNA upstream 9308 1622157 ~ 1626290 (+) True LOC118964347
XM_036963971.1 mRNA upstream 17552 1615546 ~ 1618046 (+) True LOC118944466
XM_036965368.1 mRNA upstream 24094 1609704 ~ 1611504 (+) True LOC118944738
XM_036975421.1 mRNA upstream 67939 1545257 ~ 1567659 (+) True LOC118964346
XR_005040036.1 mRNA upstream 97455 1535879 ~ 1538143 (+) True LOC118944733
XM_036965454.1 mRNA downstream 9651 1689758 ~ 1691571 (+) True LOC118944750
XM_036965438.1 mRNA downstream 15606 1695713 ~ 1697610 (+) True LOC118944749
XM_036965430.1 mRNA downstream 21649 1701756 ~ 1704997 (+) True LOC118944747
XM_036965416.1 mRNA downstream 29001 1709108 ~ 1717917 (+) True LOC118944744
XM_036965425.1 mRNA downstream 52811 1732918 ~ 1736240 (+) True LOC118944745
TU245742 other upstream 19219 1609638 ~ 1616379 (+) True G215820
TU245689 other upstream 101517 1523269 ~ 1534081 (+) True G215792
TU245231 other upstream 549068 1084442 ~ 1086530 (+) True G215455
TU244628 other upstream 1117411 516360 ~ 518187 (+) True G215012
TU245773 other downstream 124281 1804388 ~ 1805255 (+) True G215843
TU245816 other downstream 280761 1960868 ~ 1966052 (+) False ahr1a
TU245815 other downstream 304876 1984983 ~ 1985796 (+) True ahr1a
TU246414 other downstream 781110 2461217 ~ 2462744 (+) True G216353
TU246526 other downstream 892288 2572395 ~ 2574899 (+) False G216438

Expression Profile