RNA id: XM_036965382.1


Basic Information

Item Value
RNA id XM_036965382.1
length 5224
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110519742
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1661660 ~ 1673583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTGTACAGCATTGTTACGTCATCACTGATAAACGTTGAAACTGATGAGAAACCGGGAGCAGTTCAGTCTGATTCTCGCTAGTCCTGGAGGAGCGTTCATTTTGGCAAGGAAATGTGCTGATTTTGCAAGGACGTGAGAAGAAAGAGTTCAAGATCTGATAAAGATCAcagagaggttgagagacagaCCAAGTTGGAAGAGGCTGTTCTAGAGACAGATATCCCAACTCTGTCACTAGAGGCTGAAGGAGAGATTGAGATGCAGGAAGCTGATCTGAAGACAGATGGCACATCTCAGTCACAGGAGGTTGAAGGAGAGAGTGAGTTGGACGAGGCCATTGTCATCCCATCTCAGTCACAGGAGGAGGCCAAAGGAGAGAGTGAGTTGAATCAGGTTGATCTGAAGACATCCACATCAACTCTAACACTGGAGGTCGAAGGAGAGAGTGAGTTGAATCAGGTTGATCTGAAGACATCCACATCAACTCTGACACTGGAGGTCGAAGGAGAGAGTGTGATGCAGGAGAGTGATGATGTAGAAACAGCCGGGCCATCTCAATGCCAGGAGACTGAACGAGTGGCAAAGGCTAAAGTGGTGACCTTCACTACCATGACCCGCAAGGCTGCAGCCTCCCAGACCAGCCTCACCCTCAGCAGGGGAAAGAGAAGCTACCCAGACCTACACACCTTTGTGCAGGACATGAAGGATGGCCATTGGAATCTGCTGAGTGAGAATATGCGTGCCGGGATGAGCAGAGATGAGTTTAGTGCTAGGTGCATGGATATTACAAATTGGGTGATGGAGTCTACATCCACTGTGGTCGTTCCCGCCCTTGACCTCACCATGCAGATCAGGCTCTCTGATTCGTCAAGCTCTTCTGGATCAGGAAGTAATGAGGCTAGAGAAGTGACCTCTCTTGGCCGCAGCGTCAGATTCAGCTTTCGTGGTGGACCCAGTAGACGCATCAGTTCAAGAACTACTTGCAGCACACAAACTCCCAcgcctttcccctcctctcacagGTCCATGACCTCTTTGCTGAGTGATGACGAAGAGCGATATGTCTCCTCACCTGAGGGTGGTGATAGAGAGATGAGACACAGACCCCACTCGGCACCACTGAGTTCTGTGTTTGGAATCTCTGAGGATTCTGTCTTCAACATGGTCCAGAGAGGCCAGTCGCAGAGTGGCATCGTACTGTCGTCCAGTTGGAGTAGACGGGAGAAATACAGACCTGTCAAAATACCAACGGACACCAGGTTTATGATGGGTATTGTAGAGTTGGTAATGAACCTTCTCAACTCCAGATTGGCTGAGCTAATGCGAAGTTTCAGTCAGGGAACTCTAGGTCCGCTGTCTGGTAGTATCTCAGCAAGTCAGCAGTTTGCCCAAGAAATGCTAAGCATGGTGTCTGCTAAGATGTATTCCCATGCCATAGAGCATATTGCGCACGGCTACAAGTCTCCCCTTGAGTTAGAGAGGGAGCTTGAGGCCATATTGGGTCCTCTGGCTGGACAGGTTATAGTCATCATCATAGATAGCATCTTTAAGGCTAAAGCCAACGGAGGAAACAAGGGACGAGCGACCAGCCCCTTGACCTATTTTCTCACTGCCGTTTCGGCAGAAATACAAAGCCTAGTTGTTCAGAGATCGGCTAGCAGACCGTCCACCAGACTGTCCAACAACGACCCACTGCTGAACATTTCCAAGTCAAAGGTCTTAAGATCAGTTCTGCTCAAAATGGCAGAACTCTTTGGCCAAGGTCCAAGTGAAACCTGTCTAGTTCCAGTAGTCCAGAGTCAGTCCGACAACTCTGTTTGCGACTGGACTCTGAATGCAGGCACCGTTCATCCAAGTCAATTTCTGTCCCACAACAGAATGTCAGAAGTGTCATCCGATGTTGTGGATCTTGTACTTGAGGTTTTTGGGATAACAGGATTTTTGGATAGCAGGAGCCCGTCAAGGCCACAGAGTGCCTGCTCCTACAACTCAGCTAGTGGAGCAATAGATATGAGAGCTCTTGCTGGGGACTTGGTCAGACAGGTGTCTGTCAAACTCAGACCCTTTGTCTCTGAGAGTCAACTCTCCACCATGTCCATGACAGATCTGTCATATATTTCTGACTCCACCTTGAAGCAGTTGTGTTGTAGCTCTGCTGTTGCTGCAGCAACGGTCTGTCAAGCAATCAAAATGGAGCTCGAGAACCAGAGACCAACCGACCTGTCAGCCAGAGACCTACTATCGTCTCTGGTAGAGAGCATTGAGGACATGGATATTTCTGACATCCTCCAGGGCCCGTCGGCCATTTTGGAGGAGGCTGCTATGATTAAGCACCCAGAGATCTCCACCTCGACAATATACAGGTCTCTGCTTCTCGACTCATCTCTCGCCTCCTCTAACATGGTCACTGAGAGCATTATCTTCAACAGCCCACGCCCATCAGAGGAGAATGTGAGTATTCAGAATGTGCTCCCTGTTGATAAAGTTGACATCCTCCATGGTCAACCAGTGGAGGGGTATATCGTCAAAGCTGAGCAATGCATCACTCAGGTCATTCAGGATGCAGCTGTGACATATACTAGCGTGCTGGATAAAACCGACACTGGGAAACTGTCAGaagttctgtctgtctgcgttTCCGCTGAGAATATTGAGGATGCATCCTCTGATCTATTTGGTGGAATTATTTCCGACCTGCATGAGGTATCTGAGGTCAATAAGACCTCCATGCGTACGAAATCAGGTCGCAAAATGTTCTGGATGGAAGTGAGTTCAGGTTCCCAGAAGATTTATACCAAAACCCTGGACAAACTGAGGAAGCTTTTCACCTCTCACCTTCTCACTGAGGGAAAAAATACTCCTGTGCAAATTGAGTTATATGACACTGGACTACTTGTAACTGAGACCACTGTGGAGGTATCTCCTGTacagaagacagacagtaatacctCTTCAATGTCCTCAGCCCACCAGCTCACCCTCGACACCTGCACTAAAGGGGTCATCAAACAGGTGATCTCGGTGCTGAGGGTGGAGACTTCAAAGGAAGTCAAATGCGAGAGCATGTCAAATGCATCCTTCGACTTCAACCAGAAGTTGGACTCTATAATTTCGAAATTAGAGAGCCTCACCATTTCGAGTGACGGGACGTCAGCCAAGATTGCCAGGCTCACGCGATCTCGTAGTGCAGCCAGCAGATCCTCTAACATTTCCATCCAGAGCTTTCACAGTGCTGAGTTCCAAGCTACGGCCAAACTGATTGTGCGTGAGGCCATTCTCAGAGCTGCTAGCGAAGCCAACTGTTCTTTGCCGCAGAGCATGACTAGCAGCACCTTCTCACACCATGTGGTTTCTACAACTGAAGATATAGTGAATATGATCATGCAAGACCTTGAAAGTCTATCCCGGTACACAGTGGAGGACACAGACTCCTTCCCACTAGGAGAGAAAAAGCTGCAGTCCCAGCTCAATCCCAGAGTTGTCTTTGACACCTTATTGGATGCTGCTCATACCATGTACCACAGAGTAAAGGATAGACTGAACGTCTTTTTGTCTTTTCCACCCGTGTCAGTCACCACAGCCAAAGATGTGCTGGACTCCACCCCTGTGGAGACACTCAGATGCTCAAAGTCCCCTGACACTGCTCTTGTTAAGGACAGGAGCCGCCCTCCGTCTGTGAGAAGTGAGAAGCCATTTTCAAAAGTCAGTTTGACTAAAAGGTCTAAAGCCCTTGTGTCTTCGAGTGGCTCCTCCACAGACCACCATGTAATTGACACATGCAGTGAGGATGTCACTCTGCCTACCAGGAGTATGTCAGTTGTGAGCGACACCAGTTTGAAGAGAACCTCTCCTCTCCATGGTAGTGGATTGAGTGCAAGTTGTGAACCTCTTGTGGCTCTACAAGACGGAACAGTGGCAGTCAGCCAAGAAGGCTTTAGCAAAACTGCAAAGGAGACGCTCAGCTTGATCCTAAATGTGATCAAGTGCAGATTGGCCAACTCTGAGAGTTCATCTGTTGGGCAGAATGCAAGGGAGGAGCGTCTGATAACCACTAACATGTTAGACTCTCTACTGGAGAGCCTTGACCTGTTGCCTGACATGAGTGCTGCCAATGAGATCACAAGGACAGAATGCCATACCTCTAACGCAATGGACAAGACAGGTTCACAGTCAGCGCTTGTGAATCAACAAGAAATAAACATATCTGACACCAGTCTCATAGTGAAAACTATAATGGACACATTGAAGACAGACGACCCAGAGATGGCTTCAGCAGAAGAACATCTGGATAGACTCCTGTCAATTGAAGCCCTTCAAGATGCGTCTGGCAACCTGATCGCAAAGGTCCATGGTCTCATTCAGGAGATAACCATAAGCCGCCAGCTTCAATCCACAACTGGCCACAGAAGCCTCTCTCAACCAGCGCTGCCAAAGCCAGCACTGAGGAAGCTGTCAAAGGACGATGCGTCAGAGCTCGTTTACAGCTTTGCCCAGACTTCTGTTAGCAGACTCCTGGGGCAGTGTGTGGTTAGGCCTATGCCACCCACCGCTGACAGGGTTTTGGATCAGGTCATCAAGTTGATGACAGACATGGTGATGGACAGCCTGACTGATCTGTCCAAGTCTGCAATGGAGGATGTTATTGTACCCAGGTCGGTCACACCAGCTTGCTCTTCTTACTCAGACACCAGCAATGCCGCAAGTGACATCACTCATGGTATTGTGGCTGACCTTAATGCTACTGAGGAATTCCCTGCCAGGGGCCTTAGCCCGGCTGATGTAAAGGCTGACGGCATGGCCCGCCTTCCCTCTGCCAGGGGGGAAGAGACTAAGAAGAACAGGAAGTGGCATTTCCTACCCAAAATTGTCAAGATTCCAAAGATCAGGATTAAGCTGTTCAAGACAAAGGGGGAACCAAAGAGCCACCCTGAACAGGATTCTCTGCCTACCAAACGTCTCAGAGAGACTCGTATTTCACAGGATGCTGAGTGTGAGGTTCCATCCACTTCCCCACCCAAAGAGGACCTGACAACCACACTGGCCCCTGCTCCCCAGGAGTCCCAGTCCCGTAAACGCCCTCTCATAGTCAGGGTGTTACGAGCTATCTCCAGAGCCGTCTCCAAACCATTCAGAGAAGCTTTTGGGAAGAAGAATTAGCCAAATGCCAGATTTTATTACTATTTTAATCAGAGCctttatttaataaaacattacTGCATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245905 lncRNA downstream 18667 1630781 ~ 1642993 (-) True G215951
TU245903 lncRNA downstream 30136 1630781 ~ 1631524 (-) False G215951
TU245732 lncRNA downstream 79386 1581980 ~ 1582274 (-) True G215813
TU245728 lncRNA downstream 84744 1573282 ~ 1576916 (-) True LOC118936608
TU245720 lncRNA downstream 127734 1523294 ~ 1533926 (-) False G215806
TU245922 lncRNA upstream 16823 1690406 ~ 1716788 (-) False G215963
TU245927 lncRNA upstream 16823 1690406 ~ 1702628 (-) True G215963
TU245935 lncRNA upstream 73347 1746930 ~ 1747316 (-) True LOC118944740
TU245937 lncRNA upstream 101417 1775000 ~ 1806023 (-) True G215972
TU245943 lncRNA upstream 117364 1790947 ~ 1814787 (-) True G215973
XR_005040038.1 mRNA downstream 52062 1607041 ~ 1609598 (-) True LOC118944737
XM_036965320.1 mRNA downstream 68045 1583116 ~ 1593615 (-) False LOC118944735
XM_036965332.1 mRNA downstream 68045 1583116 ~ 1593615 (-) True LOC118944735
XM_036965348.1 mRNA downstream 79958 1571677 ~ 1581702 (-) False LOC118936608
XM_036965391.1 mRNA upstream 66378 1739961 ~ 1750261 (-) False LOC118944740
XM_036965395.1 mRNA upstream 66378 1739961 ~ 1750262 (-) False LOC118944740
XM_036965405.1 mRNA upstream 66378 1739961 ~ 1750262 (-) False LOC118944740
XM_036965410.1 mRNA upstream 66378 1739961 ~ 1750262 (-) False LOC118944740
XM_036965470.1 mRNA upstream 76836 1750419 ~ 1755795 (-) False LOC118944751
TU245901 other downstream 43520 1600226 ~ 1618140 (-) True G215950
TU245090 other downstream 741987 915959 ~ 919673 (-) True G215354
TU244568 other downstream 1180051 481047 ~ 481609 (-) True G214982
TU244160 other downstream 1482069 177723 ~ 179591 (-) True G214663
TU244157 other downstream 1483273 177723 ~ 178387 (-) False G214663
TU245915 other upstream 253161 1926744 ~ 1952588 (-) True LOC110516567
TU246015 other upstream 384332 2057915 ~ 2058429 (-) True G216038
TU246052 other upstream 447620 2121203 ~ 2121857 (-) True G216066
TU246045 other upstream 450593 2124176 ~ 2125352 (-) True G216059
TU246996 other upstream 1063278 2736861 ~ 2738467 (-) True G216811

Expression Profile