RNA id: XM_036965438.1


Basic Information

Item Value
RNA id XM_036965438.1
length 1452
RNA type mRNA
GC content 0.69
exon number 4
gene id LOC118944749
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1695713 ~ 1697610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgatcatgggaggtgtgagagaattgctgctcgttgtgatgactgtgggggttgtcaaagtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagagctgtcatcaaatgacgtctccattgtgcatgccctggccttgctccgatccatagggtctgacgctaaacaagccagagaagAGTATTTAGAGACCAATGAAGTAGAATCCCAAGCTTCTCCAAACCATGGTAGCTCTCCGGCAAATGATGCCCTGTCCTCTGAGGAGAAGCTGAGGCGCGTGTCCTcggacgacgccacctctgacgctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtccggcgacgacgccacctctggagctgcgaccggcccgtccggcgacgacgccacctctggagctgcgaccggcccgtccggcgacgacgccacctctggagctgcgaccggcccgtccggcgacgacgccacctctggagctgcgaccggcccgtccggcgacgacgccacctctggagctgcgaccggcccgtccggcgacgacgccacctctggagctgcgaccggcccgtccggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtccggcgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245755 lncRNA upstream 13683 1659224 ~ 1682030 (+) True G215828
TU245735 lncRNA upstream 26135 1589307 ~ 1669578 (+) True G215815
TU245694 lncRNA upstream 160576 1494635 ~ 1535137 (+) False G215792
TU245683 lncRNA upstream 161791 1494635 ~ 1533922 (+) False G215792
TU245776 lncRNA downstream 121812 1819422 ~ 1825947 (+) False LOC118944761
TU245775 lncRNA downstream 127556 1825166 ~ 1825947 (+) True LOC118944761
TU245792 lncRNA downstream 225699 1923309 ~ 2021561 (+) True G215853
TU245835 lncRNA downstream 316257 2013867 ~ 2014326 (+) True G215894
TU245841 lncRNA downstream 325475 2023085 ~ 2023300 (+) True G215900
XM_036965454.1 mRNA upstream 4142 1689758 ~ 1691571 (+) True LOC118944750
XM_036975423.1 mRNA upstream 34744 1653564 ~ 1660969 (+) True LOC110512625
XM_036963990.1 mRNA upstream 51357 1641687 ~ 1644356 (+) False LOC118944469
XM_036963978.1 mRNA upstream 58161 1630106 ~ 1637552 (+) True LOC118944468
XM_036975422.1 mRNA upstream 69423 1622157 ~ 1626290 (+) True LOC118964347
XM_036965430.1 mRNA downstream 4146 1701756 ~ 1704997 (+) True LOC118944747
XM_036965416.1 mRNA downstream 11498 1709108 ~ 1717917 (+) True LOC118944744
XM_036965425.1 mRNA downstream 35308 1732918 ~ 1736240 (+) True LOC118944745
XM_036965422.1 mRNA downstream 58356 1755966 ~ 1763658 (+) True LOC118936264
XM_036965482.1 mRNA downstream 70182 1767792 ~ 1769926 (+) True LOC118944753
TU245747 other upstream 15606 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other upstream 15606 1641651 ~ 1680107 (+) True LOC118944469
TU245742 other upstream 79334 1609638 ~ 1616379 (+) True G215820
TU245689 other upstream 161632 1523269 ~ 1534081 (+) True G215792
TU245231 other upstream 609183 1084442 ~ 1086530 (+) True G215455
TU245773 other downstream 106778 1804388 ~ 1805255 (+) True G215843
TU245816 other downstream 263258 1960868 ~ 1966052 (+) False ahr1a
TU245815 other downstream 287373 1984983 ~ 1985796 (+) True ahr1a
TU246414 other downstream 763607 2461217 ~ 2462744 (+) True G216353
TU246526 other downstream 874785 2572395 ~ 2574899 (+) False G216438

Expression Profile