RNA id: TU245776


Basic Information

Item Value
RNA id TU245776
length 510
lncRNA type read_through
GC content 0.62
exon number 3
gene id LOC118944761
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1819422 ~ 1827499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagagctgtcatcaaatgacgtctccattgtgcatgccctggccttgctccgatccatagggtctgacgctaaacaagccagagaagagtatttagagaccaatgaagtagaatcccaagcttctccaaaccatggtagctctccggcaaatgatgccctgtcctctgaggagaagctgaggcgcgtgtcctcggacgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctggagctgcgaccggcccgtctggcgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgccgccacctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245755 lncRNA upstream 137392 1659224 ~ 1682030 (+) True G215828
TU245735 lncRNA upstream 149844 1589307 ~ 1669578 (+) True G215815
TU245701 lncRNA upstream 242392 1489352 ~ 1577030 (+) False G215792
TU245694 lncRNA upstream 284285 1494635 ~ 1535137 (+) False G215792
TU245683 lncRNA upstream 285500 1494635 ~ 1533922 (+) False G215792
TU245792 lncRNA downstream 97362 1923309 ~ 2021561 (+) True G215853
TU245835 lncRNA downstream 187920 2013867 ~ 2014326 (+) True G215894
TU245841 lncRNA downstream 197138 2023085 ~ 2023300 (+) True G215900
TU245845 lncRNA downstream 204813 2030760 ~ 2030962 (+) True G215904
TU245847 lncRNA downstream 206203 2032150 ~ 2032404 (+) True G215906
XM_036965488.1 mRNA upstream 42588 1774073 ~ 1776834 (+) True LOC118944754
XM_036965482.1 mRNA upstream 49496 1767792 ~ 1769926 (+) True LOC118944753
XM_036965422.1 mRNA upstream 55764 1755966 ~ 1763658 (+) True LOC118936264
XM_036965425.1 mRNA upstream 83182 1732918 ~ 1736240 (+) True LOC118944745
XM_036965416.1 mRNA upstream 101505 1709108 ~ 1717917 (+) True LOC118944744
XM_036965491.1 mRNA downstream 34986 1860933 ~ 1863226 (+) True LOC118944756
LOC118944757 mRNA downstream 49813 1875760 ~ 1878084 (+) True LOC118944757
LOC118944758 mRNA downstream 56638 1882585 ~ 1884906 (+) True LOC118944758
XM_036965551.1 mRNA downstream 134834 1960781 ~ 1987480 (+) False ahr1a
XM_036965598.1 mRNA downstream 184330 2010277 ~ 2123904 (+) False LOC110513668
TU245773 other upstream 14167 1804388 ~ 1805255 (+) True G215843
TU245758 other upstream 72140 1670411 ~ 1747282 (+) True G215830
TU245747 other upstream 139315 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other upstream 139315 1641651 ~ 1680107 (+) True LOC118944469
TU245742 other upstream 203043 1609638 ~ 1616379 (+) True G215820
TU245816 other downstream 134921 1960868 ~ 1966052 (+) False ahr1a
TU245815 other downstream 159036 1984983 ~ 1985796 (+) True ahr1a
TU246414 other downstream 635270 2461217 ~ 2462744 (+) True G216353
TU246526 other downstream 746448 2572395 ~ 2574899 (+) False G216438
TU246778 other downstream 1191217 3017164 ~ 3019834 (+) False LOC110506718

Expression Profile