RNA id: XM_036965491.1


Basic Information

Item Value
RNA id XM_036965491.1
length 1848
RNA type mRNA
GC content 0.68
exon number 4
gene id LOC118944756
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1860933 ~ 1863226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgatcatgggaggtgtgagagaattgctgctcgttgtgatgactgtgggggttgtcaaagtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagagctgtcatcaaatgacgtctccattgtgcatgccctggccttgctccgatccatagggtctgacgctaaacaagccagagaagAGTATTTAGAGACCAATGAAGTAGAATCCCAAGCTTCTCCAAACCATGGTAGCTCTCCGGCAAATGATGCCCTGTCCTCTGAGGAGAAGCTGAGGCGCATGTCCTCGgacgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgtagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245776 lncRNA upstream 34986 1819422 ~ 1825947 (+) False LOC118944761
TU245775 lncRNA upstream 34986 1825166 ~ 1825947 (+) True LOC118944761
TU245755 lncRNA upstream 178903 1659224 ~ 1682030 (+) True G215828
TU245735 lncRNA upstream 191355 1589307 ~ 1669578 (+) True G215815
TU245694 lncRNA upstream 325796 1494635 ~ 1535137 (+) False G215792
TU245792 lncRNA downstream 60083 1923309 ~ 2021561 (+) True G215853
TU245835 lncRNA downstream 150641 2013867 ~ 2014326 (+) True G215894
TU245841 lncRNA downstream 159859 2023085 ~ 2023300 (+) True G215900
TU245845 lncRNA downstream 167534 2030760 ~ 2030962 (+) True G215904
TU245847 lncRNA downstream 168924 2032150 ~ 2032404 (+) True G215906
XM_036965516.1 mRNA upstream 33434 1824933 ~ 1827499 (+) False LOC118944761
XR_005040058.1 mRNA upstream 41245 1813134 ~ 1819688 (+) True LOC118944763
XM_036965488.1 mRNA upstream 84099 1774073 ~ 1776834 (+) True LOC118944754
XM_036965482.1 mRNA upstream 91007 1767792 ~ 1769926 (+) True LOC118944753
XM_036965422.1 mRNA upstream 97275 1755966 ~ 1763658 (+) True LOC118936264
LOC118944757 mRNA downstream 12534 1875760 ~ 1878084 (+) True LOC118944757
LOC118944758 mRNA downstream 19359 1882585 ~ 1884906 (+) True LOC118944758
XM_036965551.1 mRNA downstream 97555 1960781 ~ 1987480 (+) False ahr1a
XM_036965598.1 mRNA downstream 147051 2010277 ~ 2123904 (+) False LOC110513668
XM_036965601.1 mRNA downstream 147055 2010281 ~ 2123904 (+) False LOC110513668
TU245773 other upstream 55678 1804388 ~ 1805255 (+) True G215843
TU245758 other upstream 113651 1670411 ~ 1747282 (+) True G215830
TU245747 other upstream 180826 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other upstream 180826 1641651 ~ 1680107 (+) True LOC118944469
TU245742 other upstream 244554 1609638 ~ 1616379 (+) True G215820
TU245816 other downstream 97642 1960868 ~ 1966052 (+) False ahr1a
TU245815 other downstream 121757 1984983 ~ 1985796 (+) True ahr1a
TU246414 other downstream 597991 2461217 ~ 2462744 (+) True G216353
TU246526 other downstream 709169 2572395 ~ 2574899 (+) False G216438
TU246778 other downstream 1153938 3017164 ~ 3019834 (+) False LOC110506718

Expression Profile