RNA id: XM_036965548.1


Basic Information

Item Value
RNA id XM_036965548.1
length 4633
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110515047
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1906137 ~ 1910903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGACTTCAACCAGAAGATGGACTCAATTTCGAAATTGGAGAGCCTCAGCCGAGATTGCCAAGCTCACGCGATCTCGTAGTGCAGCCAGCAGAACCTCTAACATTTCCATCCAGAGCTTTCACAGTGCTGAGTTCCAAGCTACGGCCAAACAGATTGTGCGTGAGGCCATTATCAGAGCTGCTAGCGAAGCCAACTGTTCTTTGCCACAGTGCATGCCTAGCAGCACCTTCTCACACCATGTGGTTTCTACAACTAAAGATATAGTGAATATGATCATGCAAGACCTTGAAAGTCTATCCCAGTACATAGAGGATGACGCAGACTCCTTCCCACTAGGAGAGAAAAAGCTGCAGTCCCAGAGTTGTCTTTGACACCTTATTGGATGCTGCTCAAACCTTGTACCACAGAGTAAAGGTTAGACCATGTCAGTCACCATAGCCAAAGATGTGCTGGACTCCACCCCTGTGGAGACACTCAGATGCTCAAAGTCCCCTGACACTGCTCTTGTTAAGGACAGGAACCGCCCTCCGTCTGTGAGAAGTGAGAAGCCATTTTCAAAAGTCAGTTTGACTAAAAGGTCTAAAGCCCTTGTGTCTTCGAGTGGCTCCTCCACAGACCACCATGTAATTGACACATGCAGTGAGGATGTCACTCTGCCCCCCAGGAGTATGTCGGTTGTGAGCGACACCAGTTTGAAGAGAACCTCTCCTCTCCATGGTAGTGGATTGAGTGCAAGTTGTGAACCTCTTGTGGCTCTACAAGACAGAACAGTGGCAGTCAGCCAAGAAGGCTTTAGCAAAACTGCAAAGGATTGGCCAACTGAGAGTTCATCTGTTGGGCAGAATGCAAGTGAGGAGTGTTTGATAGCCACTAACATGTTAGACTCTCTACTGGAGAGCCTTGACCTGTTGCCTGACATGAGTGCTGCCAATGAGATCACAAGGACAGAATGCCATACCTCTAACGCAATGGACAAGACAGGTTCACAGTCAGCGCTTGTGAGTCAACAAGAAATAAACATATCTGACACCAGTCTCATAGTGAAAACTATAATGGACACATTGAAGACAGACGACCCAGAGATGACTTCAGCAGAAGAAAATCTGGATAGACTCCTGTCAATTGAAGCCCTTCAAGATGCGTCTGGCAACCTGATCGCAAAGGTCCATGGTCTCATTCAGGAGATAACCATAAGCCGCCAGCTTCAATCCACGACTGGCCACAGAAGCCTCTCTCAACCAGCGCTGCCAAAGCCAGCACTGAGGAAGCTGTCAAAGGACGATGCGTCAGAGCTCGTTTACAGCTTTGCCCAGACTTCTGTTAGCAGACTCCTGGGGCAGTGTTTGGTTAGGCCTATGCCACCCACCGCTGACAGGGTTTTGGATCAGGTCATCAAGTTGATGACAGACATGGTGATGGACAGCCTGACTGATCTGTCCAAGTCTGCAATGGAGGATGGTAAGTGAAAGTACCTCTTCATCTGCATAGGACTTCATTGTAACATGATGCTCATTACATTGCGTTTTATGATGTAAACTTCACtggttgtgtccaaaatggcaccttccatgtttagtgcactacttttgaccctatgggccctgttcaaaagtagtgcactataaatggaagaGAATGGCTTTTGGGACGCAGTGACTGACTTCCGTGGTTGCGTTCTCTTCTCCCAGTTATTGTACCCAGCTCGGTCACACCAGCTTGCTCTTCTTACTCAGACACCAGCAATGCCGCAAGTGACATCACTCATGGTATTGTGGCTGACCTTAATGCTACTGAGGAATTCCCTGCCAGTGGCCTTAGCCCAGCTGATGTAAAGGCTGACGGCATGGCCCACCTTCCCTCTGCCAGGGGGGAAGAGACTAAGAAGAACAGGAAGTGGCATTTCCTACCCAAAATTGTCAAGATTCCAAAGATCAGGATTAAGGTAGAGGGCTCAGTGTCTTTAGATTACCTCTGTAAGGCAGGGCTGAAATGTACCCTACAGATTCACTAAACCCCTATTGTCTCTGCATTAGAACAATGCTGTTGTCATTGTCTTTAGGAGGTTGAGTGAGGCCGCTGTAATACAATCCTAATacacatgggagagagagagagacaatggatgtgtcccaaattgcaccctattccctatatagtgcactacttttgaccagagctctatggacccttgtcaaaagtagtgccttaCGTAGCCTGTCTTTTTGGGTGCACGACAGTTATTTTACACAGGCTCAGTTGTCCTGATGTGTTTTGTCAACAGCTGTACAAGACAAAAGGGGAACCGAAGAGCCACCCTGAACAGGATACTCTGCCTACCAAACGTCTCAGAGAGACTCGTATTTCACAGGATGCTGAGTGTGAGGTTCCATCCACTTCCCCACCCAAGGAGGCCCTGACAACCACACTGGCCCCTGCTCCCCAGGAGTCCCAGTCCCGTAAACGCCCTCTCATAGTCAGGGTTGTTGCATCCCCACACCTACCAGTGAAGCACCACAGGCTAATATGAGCGTTAGCTCTGGGTTGTTGTGAACTAACACCTGGCTACTAAGTAGATGTGCTTTTCAGGAAGCCAAGGCACATAGGCTTTTCTGGGACCATTCCCATTTGACATCTTTCTGCAGTGGAGCATTTCAAAAGGTGTGTGATATATCCATTCGAATGTCCTTAACTATAGGCTTAACTATGGTAGTTAGATTTGGAATGAATTTGCCATAATAGTTAAGGAAGGAAAGGTAAGACCTGAACTCAGTGGTGTTTCTAGGAATGGGAGCCTTCTCAATAGCTTCAGTTTTCTGTTTCATGGGGTGTATCCCCTCTGCATCTATCACATGACCTAAATAGGCTATGCTGTTCTGGAAGAAAGAACATCTCTCTTTTAACTTTCAGATTGCAGACTTTGTCTTTTTGGGACTTCTTCAAGATTTCGCATGTGTCACGCATATCATCAATATAACAGATTACCCCTTCTTACCCCTTGTAGGATCTGAACCATCATTTTCTGAAAAATATGACGCACAGGCAACACCATAAGGAAGCCTGTTGACCTTAAAACAACCCCTTATGTGTATTCATGGTGAGATAGTGCTTAGACCGCTCCTCTAACTGTACTTGCTCGTATGCCTGTGACAAATCCAGCTTTGTTAACGTCTCACCCCCGGTCAGCTTTTTGAACAAGTCCTGTGTTTTTGGTAAGGGATACTGATCTACTTCCAGCCACGGATTGATAGTTACCTTGTAATCTCCACATATTCTTACagtactgtctgttttcaggatACACACAATTGGAGCAGCCCATTGACTGTAGTTGGAGGAAGGACCCCTTCTAACTCCAACGTAACTAGCTGTTTTTCAACCGCTTCTCTAAGTGCATACGTACTGGGCAAGGACTGCAGAACTTATGTGCAGCCCTATTAGTTACATGTAGCTTGGCTGTGATACCTTTTAGCATCCCTAGCTCTGGCTGAAACAAATATTTTTCACACAaaccatctactgtctctacagcTGTTACTGTGTACATGTGACCAGTCTAGCTTCAACTGACTGATCCAGTCTCTACCCAGCAGGGCAGGACCATTTCCTTCTACCACCATCAAGTTTCAAAAAGTTGTACTCCCATTACACTTGACTGAGATTTTCCCACTTAGAACTAATTACTGTATGTTTTTAACACCCAGTTTGCAGGGCTCAATTTTACCCTTTTGAACTTGCGGGTGTACAACCTCTCTGATAGCAAACTGCTGCACCTGTATCAACTTTCATGTTGAGTCTCACATCATCTATCCTTACATACAAAGTCTTTACGTCTACTGCAAACAGTTCAGTTCCTTTTACGTTACCCAACTCATAGTCAGTGGTGAAAACGGCTGAGGTCCCTTTATCAGAGTTCTCACTCTCATTTGAGATGTAATGTTCCAAACTCTGGCACTTGAGTGCGATGCAATGCTCCTGTGTTGAAATGACGTtcttgtcctctctctcgctGGTGTGCGTTGCCCTGATCATCGTTGCTCCACTCGTCTTTTGCCTCGTTTAATTGTTTCCCACATGACGCGAGCGGCAAGTCATGGCTACGTGTCCTTTCTTCTTGCACTCCAGAAGCTCAAAATCCACGTAGCGCCACTCATCTGGCTTGTGCCCTTTTCCCACACAACGGTAACATGGTTTACAGGTTGCCTCCGTTTTCTTGGCAACGCTTTTCTTCTCAACTGCATTTGCTTTGAAAGTATTTTGTGAAGACTGCAGTGTGCTTTTCCTTGTTACTTCAAAAGAAAATCCCATATCCACAGCCAGTGCTAATGTTAAATCTTGTGTGAGCTACATTCAGTAAACGGTCTCTCAGCGGTCTTTTAACGCCACACACAAATATCACGTACTGACAGACTGAATTTTCTTAAACTAGCGAAATACTCAATCGACTCTCCCTCGAGTTGACTCCTTGCATGATACTTACATCTTTCAGCAATACAATTTGTCATCGGTATGTAGTGACCTTTCAACAGCGCAACCAACTGTCAACGTTGTTTCACTTGGTTTCTGTGGCGCATTGAAGTcctgtaatgacctgactagatcataaaggaacaattgtccagacagaggctTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245943 lncRNA downstream 91350 1790947 ~ 1814787 (-) True G215973
TU245937 lncRNA downstream 100114 1775000 ~ 1806023 (-) True G215972
TU245935 lncRNA downstream 158821 1746930 ~ 1747316 (-) True LOC118944740
TU245909 lncRNA downstream 186178 1645154 ~ 1719959 (-) True G215954
TU245957 lncRNA upstream 30325 1941228 ~ 1941675 (-) True G215985
TU246002 lncRNA upstream 114824 2025727 ~ 2025938 (-) True G216026
TU246003 lncRNA upstream 115344 2026247 ~ 2026792 (-) True G216027
TU246005 lncRNA upstream 121632 2032535 ~ 2032988 (-) True G216029
TU246007 lncRNA upstream 124473 2035376 ~ 2035667 (-) True G216031
XM_036965470.1 mRNA downstream 150342 1750419 ~ 1755795 (-) False LOC118944751
XR_005040050.1 mRNA downstream 150342 1750419 ~ 1755795 (-) True LOC118944751
XM_036965395.1 mRNA downstream 155875 1739961 ~ 1750262 (-) False LOC118944740
XM_036965405.1 mRNA downstream 155875 1739961 ~ 1750262 (-) False LOC118944740
XM_036965410.1 mRNA downstream 155875 1739961 ~ 1750262 (-) False LOC118944740
XM_036965525.1 mRNA upstream 5668 1916571 ~ 1952783 (-) False LOC110516567
XM_036965528.1 mRNA upstream 5668 1916571 ~ 1952783 (-) False LOC110516567
XM_036965532.1 mRNA upstream 5668 1916571 ~ 1953363 (-) False LOC110516567
XR_005040067.1 mRNA upstream 263355 2174258 ~ 2190541 (-) False LOC118944769
XM_021581645.2 mRNA upstream 282894 2193797 ~ 2195426 (-) True LOC118936266
TU245911 other downstream 224115 1659080 ~ 1682022 (-) True G215956
TU245913 other downstream 243070 1661689 ~ 1663067 (-) False LOC110519742
TU245901 other downstream 287997 1600226 ~ 1618140 (-) True G215950
TU245090 other downstream 986464 915959 ~ 919673 (-) True G215354
TU244568 other downstream 1424528 481047 ~ 481609 (-) True G214982
TU245915 other upstream 15841 1926744 ~ 1952588 (-) True LOC110516567
TU246015 other upstream 147012 2057915 ~ 2058429 (-) True G216038
TU246052 other upstream 210300 2121203 ~ 2121857 (-) True G216066
TU246045 other upstream 213273 2124176 ~ 2125352 (-) True G216059
TU246996 other upstream 825958 2736861 ~ 2738467 (-) True G216811

Expression Profile