RNA id: XM_036965532.1


Basic Information

Item Value
RNA id XM_036965532.1
length 4763
RNA type mRNA
GC content 0.51
exon number 26
gene id LOC110516567
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1916571 ~ 1953363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACgggtgtgtgtgcagtggtgtaggctgattggtggtaGTGCTTGTGCTCcctatcactcagaagttaaggtgacaacaatgcctgccatAGACGTTTCCCATTTACTTcgaatgttcaaaatcataggCCTGGCCTACTGAAAGCCATCTTCAATGTGGACCCAGATGAAGTGCGCTCCCTCATATTTCAGAAAGAGGATGTGAATGTTCAGGACAATGAGAAGCGGACACCGTTGCATGCCGCTGCCTATCTAGGAGATGCAGAAATTCTAGAGCTACTCATACTATCAGGAGCCAGAGTAAATGCCAAAGACAACAAGTGGCTCACTCCTCTGCACCGGGCCGTGGCTTCCTGCAGTGAGGAGGCAGTCCAGGTGCTATTGAAACACTCTGCTGATGTGAACGCCAGGGACAAGAACTGGCAAACGCCGCTCCACATCGCTGCGGCCAATAAGGCGGTCCGCTGTGCCGAGGCCCTGGTCCCTCTCCTCAGCAATGTGAACGTGTCGGACCGGGCCGGGCGCACGGCGCTGCACCATGCAGCCTTCAGCGGACACCTGGAGATGGTGAGGCTGCTTCTCTCCAGAGGAGCCAACATTAATGCTTTTGACAAGAAGGACCGCCGAGCAATCCACTGGGCTGCTTACATGGGGCACATTGAGGTGGTGAAACTGCTGGCCTCTCATGGATCAGAGGTGTCCTGTAAAGACAAGAAGGCCTACACCCCTCTCCACTCTGCAGCCTCCAGCGGCATGATCAGTGTGGTCAAGTACCTCCTGGACCTTGGGGTGGATatAAATGAGCCCAATGGGTACGGTAACACTCCCCTCCACGTGGCGTGCTACAACGGCCAGGACGTGGTGGTAAATGAGCTGATCGAGTGCGGCGCCAACGTGAACCAGGTGAACGAGAAGGGTTTCGCCCCGCTCCACTTCACGGCCGCCTCGCGCCACGGGGCGCTCTGCCTGGAGCTGCTGGTGGGCAACGGGGCCCACGTCAACATCAAGaGTAAAGATGGAAAGACCCCCCTCCACATGACGGCCATCCACGGACGCTTCTCCAGATCTCAAGCCATCATCCAGAATGgtgctGAGATCGACTGTGAAGATAAGAATGGAAACACACCCCTGCACATCTCTGCTCGCTACGGCCACGAGTTACTCATCAATACACTCATCACGAACGGTGCTGACACAGCCAAACGAGGCGTCCATGGGATGTTCCCCCTCCACCTGGCTGCTCTCAGTGGTTTCTCTGACTGCTGTCGAAAGCTCCTCTCATCAGGCTTTGATATAGACACCCCTGACGACTTTGGAAGAACCTGTTTACATGCTGCAGCAGCTGGAGGGAACCTGGACTGTCTGAATCTGCTGCTCAACACAGGGGCAGACTTCAACAGAAAGGACAGCTTCGGAAGGAGTCCTCTGCATTATGCAGCAGCCAACTGTAACTACCAGTGTCTGTTTGCCTTGGTGGGGTCTGGGGCCAGTGTGAACGACCTGGATAAGAGGGGCTGCACCCCGCTCCACTACGCTGCTGCCTCCGATACAGACGGAAAGTGTCTGGAGTATTTGCTGCGAAACGATGCTAACCCAGGGATCCGGGACAATCAGGGCTACAATGCAGTGCATTACGCGTCTGCATACGGACACCGCCTCTGTCTGGAGCTGATTGCAAGTGAAACACCTTTAGATGTGCTAATGGAAACCTCAGGGACAGACATCCTGAACGACTCTGATGTCAGAGCTCCCATCAGCCCTCTACACCTCGCTGCGTACCACGGTCACCACCATGCTATGGAGGTCCTGGTTCAGTCTCTGCTGGATCTAGACGTGAGGGACAGCCAGGGGCGCACCCCTCTGGACCTGGCTGCCTTTAAAGGCCATGTGGAGTGTGTTGACGTCCTCATCAACCAGGGAGCCTCCATCCTGGTTAAAGACTTCACTCTGAAGAGGACCCCCATCCACGCTGCAGCAACCAACGGTCATTCGGAGTGTTTGCGTTTATTGATTGGAAATGCTGACCTCCAGAGTGCAGTGGATGTTCAAGATGGGAATGGACAAACCCCTCTGATGCTGTCGGTGCTGAGCGGACACACAGACTGTGTGTACTCGCTGCTCAACAAGGGAGCCAGCGTAGAAGCCAAAGACAAGTGGGGCAGAACAGCTCTAcacagagggGCGGTGACTGGTCATGAGGAGTGTGTGGAGGCCCTGCTGCAGCACAGCGCCAGCTTCCTAGTTCGGGACTGTAAGGGGCGGACCCCTGTTCACCTGGCGGCGGCGTCTGGACACATCGGGGTGCTGGGGGGGCtcctacatgcagcccagtcaGTGGAGACCCTTCCCGTCATCACAGACAACCAAGGCTACACGCCACTACACTGGGCCTGCTACAACGGCCATGACACGTGTGTCGAGGTGCTGCTGGAACAGGAGGTTTTCCACAAGACCGAGGGCAACTCCTTCAGCCCCCTCCACTGTGCTGTGATCAACGACAACGAGGGGGCTGCAGAGATGTTGATTGACACTCTGGGGCCGGCCATTGTCAACGCCACTGACACCAAGAACCGGACCCCCCTGCATGCGGCAGCCTTCACGGACCACGTGGAGTGTCTTCAGCTGCTGCTAGGTCACAATGCCCAGGTCAACTCCCCCGACGCCTCCGGGAAGACCTCCCTCATGATGGCTGCTGAGAACGGACAAACCAACGCTGTCGAGCTGTTGGTGAGCAGTGCCAAAGCAGAGCTCACCCTGCAGGATGCAGTCAAGAACACTGCTCTTCATCTGGCCTGCAGTAAGGGGCATGAAACCAGTGCCTTGTTGATATTGGAGAAGATTACAGACAGGAACCTCATCAACTCGACTAACGCAGCCTTACAGACGCCGTTACACGTTGCAGCCAGAAATGGTCTGACCGTGGTGGTGCAAGAGCTGCTAGCGAAGGGTGCTAGCGTGCTCGCAGTCGATGAGAATGGTTACACGCCTGCCTTGGCCTGCGCACCCAACAAAGACGTGGCGGACTGCCTGGCGCTGATCCTGGCCACCATGATGCCCGTGTCCCCCTGCACCCCGGCACCCAGCCTGACCTTCAGTGCCATTAACCACTACACCACCAGCCCCTCCAAGAGTGTTACCTTCGACAGCCTGCCTGTGCTGCGCAGCGAACACAGCTCCTACTGCAGCTTCAACAACATCGGACACCGCGGCCACGACGAAGGCTTCTACAAGGATGAGGAACTCAACGACTCAGACTCGGAGACGTACTGAGAGTGGTGGTGGTCGCTGCCCAGGAAGAAGGGAGGCAAGTGCAGGCGGATGGACAGCGAAGTGGGGCAGAGgccacaaacaaatacacacaccgtGTCTTAAATCACCATAGCCAGCTTTGGGAGGGCACGAGCCAAGACAGTCCGCACAGGAGCCTTAAGAGTCCCGCAAATAGAGAAAAGTAGGAGGTGCAACAGGCTGGCTGGCCCACACTCATTCTCTCGTACCACCAGGTTCCCTTCCAGCAGATACTGGACTTCAGAGGAACTGCTGCTGCTATACCCCATCTTTACCTTTACCCACAAAGGTCCTAAACGGTAGAAACTGTCTGGCAAACCTTATGATGGCAATAACCTGTAGTCCAAGGGGATAGTAGCACTTCACTgagagcaaaacagacagggaccaaaagatgtggaagaagcctttttaaaacttgtttttactAGAAATTGGGCTGAGAAAAAACATAAGGAGTGATGTTTCATGAGAGTGATTGTCATGTTTATCCGCACACTAAGACAGTCAGAACGCCACTAGCCTCTTGTCTGTAATCCATGTGGGAGGAGGGGAAATCATACATTTTATATGAACACATTTTAATAAAATCATTTATGTCTTAAGCTCTGTGGGAAACAACAAATTGTAGTATTTGCTCTCATGAGTAATTTCAAAGattaaatggaaccctattccctatactgaatagtacactactgttgaacagggcccatagggttctggtcaaaagcagtgcactctaaaggaaatagggtgccatttgggatgtagtttTGCATACCGGTATGTGAGCAACAGGACTTTTTTAAATTGAGAAATATTACATGTGTTATTAAACCTACCTGTCCTTTGCCCTCTAGAAAGTAAATTATTCATTCATGTATTCTTTCTTGTGATATGTCATTTTGTGCCTTCGTTAGTTACTGAGGGGAGGTTAGGAGAGTAAGGGCAGCTGTATGAGCGAAAACAATGATGCACACTAAGTACTACAACGTTCGTGAAAAGCACTGATACTATTCCGAGGCATGTGAGGTGGAAAACATGTCTCCCTTGGAGAGGAGAAACACTGTACACCAATGGTAGGACAGCAGCATTTAGATTTTCTTCTGTTGGAAAATAAATATCTTATTTGTCTTTGATCTTATAATCAATGTTTTTGACAGGTTTTGCTTGCTTTAACTTCAAAAAATGAAACCACTCAATCCTTTTATGTGATTGCTTGTTCAAATCCCCGTTTGTCTCTTTTTGAAGATCATTTTAACTGGAAATATGTACAATACATTTGCTATGTTCATCAAATCAGGAACAGGAGGTTCACAGGTTGTTGTTTCCTTATCTATCTTCTAAAAGGATGAAACTAGCATGTACATATGAAATAGTGACAATTTGAAACTTCCATGAATTATTTCACTATCTGAAGATTGCTGTATATTTTATGAGTAATAAAAGAAATGAGTTATGTTATTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245943 lncRNA downstream 101784 1790947 ~ 1814787 (-) True G215973
TU245937 lncRNA downstream 110548 1775000 ~ 1806023 (-) True G215972
TU245935 lncRNA downstream 169255 1746930 ~ 1747316 (-) True LOC118944740
TU245922 lncRNA downstream 199783 1690406 ~ 1716788 (-) False G215963
TU246002 lncRNA upstream 72364 2025727 ~ 2025938 (-) True G216026
TU246003 lncRNA upstream 72884 2026247 ~ 2026792 (-) True G216027
TU246005 lncRNA upstream 79172 2032535 ~ 2032988 (-) True G216029
TU246007 lncRNA upstream 82013 2035376 ~ 2035667 (-) True G216031
TU246009 lncRNA upstream 85360 2038723 ~ 2038972 (-) True G216033
XM_036965548.1 mRNA downstream 5668 1906137 ~ 1910903 (-) True LOC110515047
XM_036965470.1 mRNA downstream 160776 1750419 ~ 1755795 (-) False LOC118944751
XR_005040050.1 mRNA downstream 160776 1750419 ~ 1755795 (-) True LOC118944751
XM_036965405.1 mRNA downstream 166309 1739961 ~ 1750262 (-) False LOC118944740
XR_005040067.1 mRNA upstream 220895 2174258 ~ 2190541 (-) False LOC118944769
XM_021581645.2 mRNA upstream 240434 2193797 ~ 2195426 (-) True LOC118936266
XM_036964001.1 mRNA upstream 272455 2225818 ~ 2229438 (-) False LOC118944471
XM_036964010.1 mRNA upstream 272455 2225818 ~ 2229438 (-) True LOC118944471
XM_036965628.1 mRNA upstream 290124 2243487 ~ 2249198 (-) False LOC110506602
TU245911 other downstream 234549 1659080 ~ 1682022 (-) True G215956
TU245913 other downstream 253504 1661689 ~ 1663067 (-) False LOC110519742
TU245901 other downstream 298431 1600226 ~ 1618140 (-) True G215950
TU245090 other downstream 996898 915959 ~ 919673 (-) True G215354
TU244568 other downstream 1434962 481047 ~ 481609 (-) True G214982
TU246015 other upstream 104552 2057915 ~ 2058429 (-) True G216038
TU246052 other upstream 167840 2121203 ~ 2121857 (-) True G216066
TU246045 other upstream 170813 2124176 ~ 2125352 (-) True G216059
TU246996 other upstream 783498 2736861 ~ 2738467 (-) True G216811
TU247125 other upstream 1092642 3046005 ~ 3059744 (-) True G216902

Expression Profile