RNA id: XM_036965598.1


Basic Information

Item Value
RNA id XM_036965598.1
length 2973
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC110513668
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2010277 ~ 2123904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTATTCGCTTCGATTTTAAAACACGGCGCTCGCCTGACCCGAAGCCCTCTATCTGCCTTCGAGCAGGGTACTAAATTCACTTTACCGTTGCCAAATTGATCCAACCGAGTTTCTTCTCAACTCAACGTGGTTTTGTTGTACAGAAGTCAACTTCTCTAGTCAAACAGCCAAAGAGCAAAGACAGGACAACAGCACAGAAGAAAAAATCAGCACAGTTATAAACCCACCACGGTCATCCTGGCTGATCGCCTACGAGCGTTACGTCTCACAGACAACCATACGACCAACAGATCCAGCTAGTGtgGACATTAAGCCAGAGGTACTTTTGGATCCCGTGTCTCCGTTGGACCTGCGTACAGACCTGAGGATGCTGGGGCCTGGCTCGGACCCGGGAATGTGGGAGCGTCAGTTGCAGCAGGAGCTGCTCCTCATCCAGAAACAGCAGCAGGTCCAGAAACAGCTGCTGATCAGCGAGTTCCAGAAGCAGCATGAGAATCTGACCCGCCAgcaccaggcccagctccaggagCACCTCAAGctGCAACAGGAGCTGCAGGCCatgaagcagcagcaggagctggtggagaaggagaggaggcagcagctgcagcagcagcagagccAGCAGGAGAAGGAGCAGGAGAGACATCGCAGGGAGCAGCATGTCCTCTGTCTCAGCCTCAGGGGCAAGGAGCGCACCAGAGAGAGTCTCACAGGTGCTGTGGCCAGTAATGAGGTGAAGCAGAAACTCCAAGAGTTTCTGTTGAGTAAATCAAACAAGGACCTGTCTACTGCCGGAGCCACACACATGGTCATCCACCACCCCAAGCTCTGGTACACGTCCTCCCACCACACGTCTCTGGACCAGAGTTCTTCTCCCCTGGGAGGCATGTCTCCTGTCTGCCACTACACACTCCCCTCCCTTCAGGACGGACAGGACGACTTCCCACTGAGGAAAACAGcCTCAGAGCCCAACCTGAAGGTGAAGTCTAGACTGAAGCAGAAGGTagcagagaggaggagtagtCCACTGCTGAAGAGGAAAGACAGCAACGTCATGACCCCCTACAAGAAGAGGGCCCTAGAAATGATGGACTCTACAGCCACTAACAGTGCCCCAGGCTCAGGACCCAGCTCTCCCATCGGAGCCTCCAGCGCCCTGGGGGCCGAGAACgggccctcctctctccccaccaccacaaaaACCGAGCGCTGGCCATCACAGCCTAGGTTATTTCGTCCAGAGGGCTCCATGTCCAACCTTCTGAGCTTATACACGTCTCCCTCCTTACCCAACATCACCCTGGGCCTCTCCGCCACCTCCTCCCAGATCAACgCTGCCATCGGGCTGAAGGAGAAGACTGGGGAGGTCAGGCATGGTCTACCAGGGCAGCTTCTGGGGCCTGTGCCCATGCCCACGGTGACCTCCATGGAGACCAAGGTGTCCCCCAGCCATCAGGCCCTGCTCCAACACCTCCTTCAGAAGGAGCAGATAAGACGGCAGAagatcctctcctcctctgGTCAAGGCTCCATGCCCACCCACCCCCACTCCCCTCTGGCCATGAAGGACAGGCCCTCCTCCAACAGCAGACCCAAGCTACCCAAGCACCGGCCCCTGAACCGGACCCAGTCAGCCCCTCTGCCCCAGAGCACCCTGGCTCAGCTGGTCATCCAGCAGCAACACCAGCACTTCCTGGAGAAGCAGAAACAATACCAGCAGCAGATCCACATCAATAAGctgctgTCCAAGTCCATCGAGCAACTCCGTCAGCCCAGCTCCCTGGTCAACCCACACCTGCAGgagtcagaggaggaggaggaggacaacacCCGGAGGATGGCGGATGAGAGGATGGACATGCAGGAGGACAGGATGCCCCCTGGTGGCGTGATCCAGAAACACACCCTTCGctccagcagcagcagtggcagcAACAGCTCTCTCGGGGAACTGTCCTCCATCGTAGAGGCCCACCACCGCCTGGGGGTCATAAAGGTCAAAGAGGAGCCAATCGACAGCGAGGACGAGTCCCTGTCCAGTCAGAGCCTAGAGGCGGAGCAGAGGGCCTCACTCCACCAGGTCAAAGGTCAGCTGGTGATAAGAGCTATGATCTGAGAGGGGGCAGAAGATGAAGGAGATCACACACTGCGACATTCAGAGacgcatacgtacacacacacacacacacacacacacacacacacacacacacacacactgcagccaacacacacacacagagccgaCTAGGACTCCCCAGGCAGTCCTCTCCCTGCCCTGAGATGTGACGCTGTCTCAGTGAAGTGCAGCCGCACCCCAAACCCCCACCAGACTGACTCTCTGTTTGTGAACTTTGTGAAGTGATCTGTAATGTAAAGTATGTTTCATCGTGCTGTATATAACATGAAGAGAAGATTTACTAGAAGAGTGCTCCTTCTTTTTTTACTTCTAAGGAACTGCTTTGATTGTTTTCAGGTTCTGCTCAATTGACAGAATGtagtatgtatgtatacagtagATTTAGCGTAAGAGAATATTCTAGAAGGGATGGAAAGTTTAACCGTTGTACAATTTATGAATGCCATTTTATGTTCCCATAGTGTAACATTTATGCCATCAATTCACTTCAACTTTGACTTGCTGACTTGTTTTATTCAAATGTCATATTCTCCGTCGTTCTCCAAAAAGCTGTGATGTTCTGTGTTCAGTGGTCTCTGAAAATGACATGAAAATAAGGAAGCATGCTCATGTCTGTATGAGAGAGAATGTATTGTTCAACCTTAACACAACACAGCCCACCCTTACGACTGAGTACAGCCAGCCTACACTGGGAATGAGACTGTTTATTGATGTACAGTACTGCAGAGTGGAGGAGCAAACGCTAAAtcagtggatggatggatggatggatggatggatggatgatagatagatagatgatggatggatgatagatgatggatgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245776 lncRNA upstream 184330 1819422 ~ 1825947 (+) False LOC118944761
TU245775 lncRNA upstream 184330 1825166 ~ 1825947 (+) True LOC118944761
TU245755 lncRNA upstream 328247 1659224 ~ 1682030 (+) True G215828
TU245735 lncRNA upstream 340699 1589307 ~ 1669578 (+) True G215815
TU245695 lncRNA upstream 479277 1522163 ~ 1531000 (+) False G215792
TU245830 lncRNA downstream 270 2124174 ~ 2125359 (+) True G215890
TU246055 lncRNA downstream 5413 2129317 ~ 2129825 (+) True G216069
TU246074 lncRNA downstream 24044 2147948 ~ 2148180 (+) True G216087
TU246104 lncRNA downstream 69980 2193884 ~ 2194383 (+) True G216111
TU246112 lncRNA downstream 100779 2224683 ~ 2226639 (+) True G216119
XM_036965551.1 mRNA upstream 22797 1960781 ~ 1987480 (+) False ahr1a
LOC118944758 mRNA upstream 125371 1882585 ~ 1884906 (+) True LOC118944758
LOC118944757 mRNA upstream 132193 1875760 ~ 1878084 (+) True LOC118944757
XM_036965491.1 mRNA upstream 147051 1860933 ~ 1863226 (+) True LOC118944756
XM_036965516.1 mRNA upstream 182778 1824933 ~ 1827499 (+) False LOC118944761
XM_036965630.1 mRNA downstream 134647 2258551 ~ 2284314 (+) False abcb5
XM_036965637.1 mRNA downstream 134647 2258551 ~ 2284314 (+) False abcb5
XM_036965647.1 mRNA downstream 134647 2258551 ~ 2284314 (+) False abcb5
XM_036965657.1 mRNA downstream 134647 2258551 ~ 2284314 (+) True abcb5
XR_005039814.1 mRNA downstream 290567 2414471 ~ 2419132 (+) True LOC118944474
TU245815 other upstream 24481 1984983 ~ 1985796 (+) True ahr1a
TU245816 other upstream 44225 1960868 ~ 1966052 (+) False ahr1a
TU245773 other upstream 205022 1804388 ~ 1805255 (+) True G215843
TU245758 other upstream 262995 1670411 ~ 1747282 (+) True G215830
TU245747 other upstream 330170 1635598 ~ 1680107 (+) False LOC118944469
TU246414 other downstream 337313 2461217 ~ 2462744 (+) True G216353
TU246526 other downstream 448491 2572395 ~ 2574899 (+) False G216438
TU246778 other downstream 893260 3017164 ~ 3019834 (+) False LOC110506718
TU246775 other downstream 916082 3039986 ~ 3041517 (+) True G216640
TU246830 other downstream 982450 3106354 ~ 3108233 (+) False G216673

Expression Profile