RNA id: TU246157



Basic Information


Item Value
RNA id TU246157
length 779
lncRNA type sense_over
GC content 0.45
exon number 3
gene id LOC118944769
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2174258 ~ 2190541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTACAAAAGTCACGTGAAATGAACAGATGTTGTTGTAGAACAGGGACTCGCCTTGGTTCGAGAGCATTCCTCGACAGAAAGGCTTCGAAATAAGATCGGAGAGAAGCATTAGCGTTCTATTCACAACAAAAAACGACTCAGCACATCGTGTGGGTGATAATAGATTACCACGGGCCTCACCTGCGATGGAAATCTATCAAACTAAAATGGACGGTTCCAACCGCGCAGGAATTTGCTGGAGATGGGGGGGCGTTTGTGAAGCAGGTCGTCAACAGGCTGACTCATCACATATGGCCCCAGAACCGTGTCCCTCTGCCAAGATGACACTGCACAGGATATAGTCCTCATCATCAGCCACCTGGTCAGGTGAccctgacaacaacaacaacaacaacaacaaggaacAAACAAAAGTTGATTGGATGGTGTAAGAGATGATCCTGACTGCAAGTTTCCATTGTGGTCCGACTGAATCTACCAATGGATATCCTGGTGCATCTGCTTCTGGACTGAACAGGGCTGGAGAGGACCACAGTTCCTCTCAACAAATAGGCCCACATCAAATGAACTTCTCCAGATGAGACCGTGTGGAATACTGATGTGATACTCATACATGCAAAATGCTACTACAGGATAGAATAGCATGGAGAACTGTATGACACAAACAACAGTCATACTGAAGCTAACATGGACAAGTTTGCAAAGATGCAATATTTAGGAATTGATACTGACAAAATAGTGGGTGGATGATCACTAGTTACAATAGGGAAATTGCACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU246150 lncRNA downstream 10539 2163685 ~ 2165194 (-) True G216150
TU246062 lncRNA downstream 39254 2136252 ~ 2136479 (-) True G216076
TU246032 lncRNA downstream 78867 2093278 ~ 2096866 (-) True G216049
TU246009 lncRNA downstream 136761 2038723 ~ 2038972 (-) True G216033
TU246007 lncRNA downstream 140066 2035376 ~ 2035667 (-) True G216031
TU246196 lncRNA upstream 44494 2234742 ~ 2235806 (-) True G216184
TU246198 lncRNA upstream 46881 2237129 ~ 2237700 (-) True G216186
TU246197 lncRNA upstream 48423 2238671 ~ 2239438 (-) True G216185
TU246199 lncRNA upstream 50592 2240840 ~ 2241669 (-) True G216187
TU246200 lncRNA upstream 51482 2241730 ~ 2242295 (-) True G216188
XM_036965532.1 mRNA downstream 222370 1916571 ~ 1953363 (-) False LOC110516567
XM_036965525.1 mRNA downstream 222950 1916571 ~ 1952783 (-) False LOC110516567
XM_036965528.1 mRNA downstream 222950 1916571 ~ 1952783 (-) False LOC110516567
XM_036965548.1 mRNA downstream 264830 1906137 ~ 1910903 (-) True LOC110515047
XR_005040050.1 mRNA downstream 419938 1750419 ~ 1755795 (-) True LOC118944751
XM_021581645.2 mRNA upstream 3549 2193797 ~ 2195426 (-) True LOC118936266
XM_036964001.1 mRNA upstream 35570 2225818 ~ 2229438 (-) False LOC118944471
XM_036964010.1 mRNA upstream 35570 2225818 ~ 2229438 (-) True LOC118944471
XM_036965628.1 mRNA upstream 53239 2243487 ~ 2249198 (-) False LOC110506602
XM_036965622.1 mRNA upstream 53239 2243487 ~ 2249508 (-) False LOC110506602
TU246045 other downstream 50381 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 53876 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 117304 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 223145 1926744 ~ 1952588 (-) True LOC110516567
TU245913 other downstream 512666 1661689 ~ 1663067 (-) False LOC110519742
TU246996 other upstream 546613 2736861 ~ 2738467 (-) True G216811
TU247125 other upstream 855757 3046005 ~ 3059744 (-) True G216902
TU247540 other upstream 1147938 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 1496154 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 2248848 4439096 ~ 4440061 (-) False G218073

Expression Profile