RNA id: XM_021581645.2


Basic Information

Item Value
RNA id XM_021581645.2
length 1294
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC118936266
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2193797 ~ 2195426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTTTCTCAAGTATCAGAAAACATTTCTTGTCTCGGGATCCCATGTATGGATACTTTATTATTGGTGTCTTCAAAGGCGGTGAATCGAAGGCGCAACTGGAAATAACCGTTAACTTGATGCGTGGATCATTCGGACTGACTGTCGCTTGTCTGTCTTCTAACTGAGGGGTGATGTCTGAGGAAATGACCGGGGAAGAGTCGAGCTCCCCAGGCTCTCCACTAGACAGTCTCGGCAACAGTGAAGGGGAACTGGATAGGCAACCGAAGAGATGTGGGAGGAAAAGGACATCAAGCAGGAAAAACGGGGAGGATTCAGATAGCCCTACCCCTGGGAAAAGAGGGAAAAAGTCAAGCAGCAGCAGTCCACATTCTTTCGAAGACCTACAGACGCAACGAGTCATGGCGAACGTGCGCGAGCGGCAGAGGACGCAGTCACTCAACGAAGCTTTCTCGTCTTTGCGGAAAATCATCCCCACTTTGCCTTCAGACAAACTGAGCAAAATACAAACCTTAAAACTTGCTGCCAGGTACATCGATTTCCTGTACCAAGTTCTGCAGAGCGATGAATTGGACTCCAAAATGGCAAGTTGTAGTTATGTGGCTCATGAGAGATTAAGCTATGCGTTTTCTGTGTGGAGGATGGAGGGCGCTTGGTCCATGTCAGCATCTCACTAGCTCACGGCCGAAGAGCTGTAGTCCAAAATGGTGACAGCTGATTCTGCTTATCAGTATGACAACGGGGCAATTCTGGAGAATAATGCTGGAAACACACAAAGCTGCGGTTTATGGGAGCAAACTTTGACAACCATTTAAAACCAAAAAGGACAGGGCGTGGGGAGAGCACTTTGCCTGGGAAAGGCCCGCGTTTGGACGAGCTGGATCTGCATTCGAGTGCTAggctactacactactacattcTGAAATACgttagtttttttttattgttgacGACGAATGTTACTTGGAAATGTATGTTTTCATGCATGTCTTTGACTCTGTGGACAGTATTCTGTGGAGGTTAAAGGGCAGCATCGACGCATTTGTCTCAGTTTCCGTGTGAGACTTTCGATGTGGACTGACTGCGGTATTATAGGCTAATGGGTTGAAATAATGTGTCGCCAACCTGTGCAAAAATAATTGAGGTTATTCTTTTCagaatacatttatttatttattgatgaCACGTGTTACATGAGGAATAGATCTTATGTCTGAAATGCATTCCTATTTTTATTATTGTTGTGTAAATAATTGTATATTTTCCGCAATAAAGTAAATGATAAAACAAAACAA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09069 TWIST; twist

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246157 lncRNA downstream 3549 2175733 ~ 2190248 (-) True LOC118944769
TU246150 lncRNA downstream 28603 2163685 ~ 2165194 (-) True G216150
TU246062 lncRNA downstream 57318 2136252 ~ 2136479 (-) True G216076
TU246032 lncRNA downstream 96931 2093278 ~ 2096866 (-) True G216049
TU246009 lncRNA downstream 154825 2038723 ~ 2038972 (-) True G216033
TU246196 lncRNA upstream 39316 2234742 ~ 2235806 (-) True G216184
TU246198 lncRNA upstream 41703 2237129 ~ 2237700 (-) True G216186
TU246197 lncRNA upstream 43245 2238671 ~ 2239438 (-) True G216185
TU246199 lncRNA upstream 45414 2240840 ~ 2241669 (-) True G216187
TU246200 lncRNA upstream 46304 2241730 ~ 2242295 (-) True G216188
XR_005040067.1 mRNA downstream 3256 2174258 ~ 2190541 (-) False LOC118944769
XM_036965532.1 mRNA downstream 240434 1916571 ~ 1953363 (-) False LOC110516567
XM_036965525.1 mRNA downstream 241014 1916571 ~ 1952783 (-) False LOC110516567
XM_036965528.1 mRNA downstream 241014 1916571 ~ 1952783 (-) False LOC110516567
XM_036965548.1 mRNA downstream 282894 1906137 ~ 1910903 (-) True LOC110515047
XM_036964001.1 mRNA upstream 30392 2225818 ~ 2229438 (-) False LOC118944471
XM_036964010.1 mRNA upstream 30392 2225818 ~ 2229438 (-) True LOC118944471
XM_036965628.1 mRNA upstream 48061 2243487 ~ 2249198 (-) False LOC110506602
XM_036965622.1 mRNA upstream 48061 2243487 ~ 2249508 (-) False LOC110506602
XM_036965617.1 mRNA upstream 48061 2243487 ~ 2249509 (-) False LOC110506602
TU246045 other downstream 68445 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 71940 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 135368 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 241209 1926744 ~ 1952588 (-) True LOC110516567
TU245913 other downstream 530730 1661689 ~ 1663067 (-) False LOC110519742
TU246996 other upstream 541435 2736861 ~ 2738467 (-) True G216811
TU247125 other upstream 850579 3046005 ~ 3059744 (-) True G216902
TU247540 other upstream 1142760 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 1490976 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 2243670 4439096 ~ 4440061 (-) False G218073

Expression Profile