RNA id: XM_036965617.1


Basic Information

Item Value
RNA id XM_036965617.1
length 3850
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110506602
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2243487 ~ 2249509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTGCTGCAGTTTCAGGTGTTGCAACACTCTTTGCGTAAATACAGGATTGCATTACGGATATTGTAGTTGTATAATAAAGTTAAACCAGCTCATTTGAAGAGTAGCCTCATTGTTTTGAACTACTAGTCCCGGAATGCTTGTAGTTTCAAAGCAAACAGAAGCCGAGAGTTGTGGCGTGAAGGTGTAAAGATATGATTTGGTTAGTGTCTAAATAAGGCTATGGCGGAAACCTAATTACCATGGATCAAAAGTGAGATTCCCCGACATCTCTGATACACAGTTTGGCGAGACATGGTAAATGTAAAGATGGCAGCTGTCAGAGCAAAGTCATTTCGTCGCCAAGGAAGTCTCATTAGGAGCAAATCTGAGGGGACGTTGATTGATCTAGATGACACTGGAACGCTGAACATCAACAATTTAAATGGGAGTAGTTACATAATAAATCAAGTGACAAAACATTCAGAGTGGCCTGTGTTGCAGCCGGAGGTCAAACATGGAAGTCAAACCACAAATCCATTCTGGAACAAACTGTCTATATCCAATCCGTTTTTGGATGACATTTTACACACAAACAATGACAAAACATTAAACAACGCTGATCTATCAGTACAGAAAGATGAACCTTTGACTCTGTTTGACACTGAGAACTTTGACGCCAGTAGCACATCTTCGGACGAAACAAACTTCGCCCATTTTGCGGATACGAAGCAAAAGAGCATAAGACAATCAGGGAGATGGAGGAGTGCCTCGGATATTCTCGACGACCAGGAGAGAAAGGAACCGCAAAGGGAAAATGGCCTCAAATTGTCAGCAGGCCCATTTCTGAATGCAGAttttgagtggttgaaaaatgaccgGGAGGCGTACAAAATGGCCTGGTTGAGTCACAGGCAACTAACGAGGTCATGTCTTGACCTAGGCCTGATGAGTCAGAGTCCTGGATGGGCCCAGACCCAAGCCACCGACTCTCAGATAGTCTGCAAGATAGGTCACAGCGGAGGGTCACTACAGTTACCAGACTCTGATATTACCGTCCATATCCCAGAGGGCCATGTTCCTGCTGGGGAGGTTCAGGAGGTTGCACTGAAAGCCATCCTGGAGCCCCCTCACGGGCTGAACAACAACTACATGACAACCGTGAGTCCGCTCCTGGAGGTGAGTCTCAGCAACACGAGCGGAAAGGAATCCATCACGCTGGAAATGAAAATGGTCGCGGAGGTCAAGAAGGATCCGATAAGTCAGGTCATGACCACATTTGTGGGACTAGTGTCCAACAAGAGAGAGGGACCTTATCAGAAAGTCAAGGACTGTTACATTTACAAGAACATCATGCAGATGAGTCTTCAAGACTTAAAGTCTAATTTCTATGTTATTGTAGCCGCAGAGGCCTCGGTTATCCAGCCCCCTGCTACATCCGTTTGGGATTACCTGGATCGTCAAGTCACCGTCGCCGTTTATGGCCCAAAGTATATCCATCCATCTTTCAAAGTGGTCGTGGTCGTCTCTTGCCACGATAACGTTCCACCGAGGCTTCCGTTCTCAGATATCCACAGGGGCAGCAGAAACTTGCCCCCTCTGGTGCTACAGCTCTGGGAGAAGCACCAGTTTAGCCCAGAGAGACTGAATGACCTACACATTGCGACTTCCGTCATAGCGTCAAAGTTCGAAGTCAAAGCCCAGGATAAAAGGAAAGAGGTGAAACAAGGGCTACTCAAACTGGGTAAAGTCATTCACCTGCCTCTTGAGCTGGCCAAGATGGGCAATGGGGAGATGGATTCCTTTAAACTATGCCTCCAGGTGAGGGATTCAAACAGCGTCACAGTAGCAGAGTTCCAGGTGTCCTCCCCTGCAGCGGCACCTATTCGCTCTGAAAAGCGAGATCCCATGCGAAACAAAATGTGTCAATCGCTATCTATACCGGAGGAATCCGTCCCAGAGTTCCCCAAATTCTGGACCAGACCTGTGAAGGTGCAGTGTTACGGGGTGGCACTGAAGTCAGTGCTCCGTCAACCGCGAGTGGAGTACCTCCTGGAGTACTTCAAGGGTGACACCGTGGCTCTCCTCTCCAGAGAGACCGTGAGGTCGGTGGGCCAGTCCAAAGTCAAGGAGTGGTACATCGGCTTCCTCCGAGGCAGGACCGGCCTGGTCCATTGCAAGAACGTCAAGCTCATCACCCGAGACCAAGTGATCGACTTCAACGGCACTGACTTCACCACCGAGACCCTCTTGGACAACATGGCACTGCCGTTCAAGAAGCTCACCTACATCTACTCAGACATCCAGACACTGGTGACTGAACACATCCCCAGCTGGAGGGGCTTCGCTGATGCCCTGGGCTACTCGAGCTTGTTGCTGGACACAATCACACGGAGACATGCTGAAACAGAAGCCGAGAAGGTGGCCTGCGTGCTGGAGAAACTGAAGGAGGACTGCCACACTGAGAACAGCAAGAAGAAGTTCCAGCACAAGCTCATGATCGGTCTGTTGAAGATGGACTCTCAGGCTCTAGTGGCTCATCTGATCCAGAACACGGTCATCCTGTCCACAGCGGTGGAGCTGGGTATCAGGTGGAGGGAGCTCGCTGAGAGGCTGGGGAAACTCTCCAGTGCTCAGATCGCTGCTTACGAGGCACCACACCGGGGGAAGAGTGGAGAAGTTAGCGCCGTGTCTATGTGGAAACCTGCCTATGACTTCCTGTACTCATGGAGCCAGTTGTACGGGGAGGGCTACCAGGACATGATCCAGGACCTCCACCTGGCCCTAGACAAGATGAAGAGCCCAATCACCAGACAGTGGAGGCAGCTGACCGGGGCGCTAATCGCAGTCAACTGTCTGGAGATCCTCAGGGTCTcagccttccccaaaccatagaaCCATAGAACCCCACTGAGGAGAAGAATGAGCACGCTGGAGAGCTCAAATGGGTAACAACTGTAGAACTGAGGCCACAGAGGCCCTTTGATCAAGCTTACTGCAGTTCCCGCTGTCTTTGAATATGGAGGTCCTTGTTACGATGCAGAGGGGGAGGCGAAGATGAAGTCTGTTTGTTCTTGTTCTTGTATTGTGTCGTGTCTTTGCCCACTTTGTCAGAGTTTCTTCTTAGAGTTCACTTCATGTCGTAAACATAATTATAGCTATATTTAATTATTAATTGGGGCTAGATACTTAAACTATATTGCTAGATGTTGTTCATACAAAGCCAGAACCAGTGTATGGACAGATTCTGTTACACAGGATGCAAACGAACATATATCTCAGCCATATTAACCATATGTATCTTGACATGAGTTTTTATAAAGGTTTCGTTTTGATAATTTGTCTAACAGATATCTGCTTCCTTTGACATCATTTCTTAAGACCAAACAGCAGAAACTATATTGAGGTCTGTTACTTTGGGTTTTTCTGTTAGACACTATGTGATAGCGCTTGTTATTGATTTGACATTAATAGTGAGGCAACATACAGTAGAGTTACTTCCAGTTCCAGTTGTCACACGGTTTCATACCTTTTATATTTTATGTTACAATGTTACATTAAATCCCCCTGGTTTttcattacattttacatttatttacgtTTATTTTAGCTGTATTTACGCTAATTTTAGTTAAGGTTGGAAgggattacatttgttttatctgCCAGATCCAATCCTCAGTATTCAGATTGCGATTTTTTAACTCCATGTCTTAAGCCCATACACTGAAACCTTTTTCAGTGCATTTAGTTTTGTCTACTTGAAAATAGCATATtatgttaaaatatattttaaatatgtaatataatgtaaaacAACCTTGTTGTGATTTTTCTGAAATATAATATTTCACAATGTTGATTTAttact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246200 lncRNA downstream 1192 2241730 ~ 2242295 (-) True G216188
TU246199 lncRNA downstream 1818 2240840 ~ 2241669 (-) True G216187
TU246197 lncRNA downstream 4049 2238671 ~ 2239438 (-) True G216185
TU246198 lncRNA downstream 5787 2237129 ~ 2237700 (-) True G216186
TU246196 lncRNA downstream 7681 2234742 ~ 2235806 (-) True G216184
TU246211 lncRNA upstream 18206 2267715 ~ 2270831 (-) True G216199
TU246214 lncRNA upstream 27352 2276861 ~ 2278197 (-) True G216200
TU246218 lncRNA upstream 29787 2279296 ~ 2284314 (-) True G216202
TU246248 lncRNA upstream 53437 2302946 ~ 2303148 (-) True G216216
TU246249 lncRNA upstream 54866 2304375 ~ 2304578 (-) True G216217
XM_036964001.1 mRNA downstream 14049 2225818 ~ 2229438 (-) False LOC118944471
XM_036964010.1 mRNA downstream 14049 2225818 ~ 2229438 (-) True LOC118944471
XM_021581645.2 mRNA downstream 48061 2193797 ~ 2195426 (-) True LOC118936266
XR_005040067.1 mRNA downstream 52946 2174258 ~ 2190541 (-) False LOC118944769
XM_036965532.1 mRNA downstream 290124 1916571 ~ 1953363 (-) False LOC110516567
XM_021586374.2 mRNA upstream 36785 2286294 ~ 2289546 (-) False sp8b
XM_021586367.2 mRNA upstream 36785 2286294 ~ 2289553 (-) False sp8b
XM_036965672.1 mRNA upstream 36785 2286294 ~ 2292006 (-) True sp8b
XR_005040075.1 mRNA upstream 104774 2354283 ~ 2388299 (-) True LOC118944775
XM_036965683.1 mRNA upstream 211654 2461163 ~ 2507159 (-) False LOC118944776
TU246045 other downstream 118135 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 121630 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 185058 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 290899 1926744 ~ 1952588 (-) True LOC110516567
TU245913 other downstream 580420 1661689 ~ 1663067 (-) False LOC110519742
TU246996 other upstream 487352 2736861 ~ 2738467 (-) True G216811
TU247125 other upstream 796496 3046005 ~ 3059744 (-) True G216902
TU247540 other upstream 1088677 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 1436893 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 2189587 4439096 ~ 4440061 (-) False G218073

Expression Profile