RNA id: XM_036965672.1


Basic Information

Item Value
RNA id XM_036965672.1
length 2754
RNA type mRNA
GC content 0.48
exon number 2
gene id sp8b
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2286294 ~ 2292006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGCACGTGACTGCGCAACCTTGTCAGTTGGCTAGAACACATGTTGTGATTAGACCACCGGTGGACGAGcaagcctctctctcctcagttaTTCCTAATTAAACGCAATTCCCAAAGTACCATTTATCTTGCAGGAGACAGGGTCTACTGTTGTACCGCCTGCGGGTGGAGGGGATGCAGCGCTGCGCTCAGCCTCGTGCACTACAGACAGAAACATCGAGGGTCAATCGATATCAATATGGCGCCGAGTGGAGCACGGAGGAGCCGAGGCTAGGATCGACTCCTTTAGCCATGTTGGCTGCGACATGCAACAAGATAGGGAGTCCGAGCCCATCACCATCCTCCATTTCGGATAATTCTTCATCTTTTGGGAAAGGCTTCCACCCGTGGAAGCGAGCCACCGCCAGCAGCTGCAGCCTTGGGTCCGGCCTGTCCGGTTTTGGAGTGTCCCGTAACGGAGCTGGTCTATCGGACTCGTTTGGCACCAACAGCTCTCCCGGATCCAGTGCCTTCTCCCTAACGTCCGGCAACTCATCCACGCCCCACTTTGGAAACGACTATTCTGTATTTCAGGCCTCCGTTACAAACAGTTCTCAAGAACCCAGCCATCAGCCCGTCTTCATTTCCAAGGTGCACTCCTCAGTGGACAGTCTGCAAGGCATCTACCCGAGAATGAGCGTTGCACATCCGTACGAGTCCTGGTTCAAGTCGTCCCATCATGGTATCCCCACAGGAGAGGTTGGCACCACCGGCGCGTCTGCATGGTGGGATGTGGGAGCGGGTTGGATTGATGTTCAGAACCCGAGTGGAGCAGCTCTACAGTCCTCGTTGCACTCCGGTGGACTCCAGACATCGTTACACTCTCCTTTAGGGGGCTACAATTCCGATTACTCCAGCCTAAGTCACTCAGCCTTCAGTACAAGTCCCTCTCCACACCTTTTGACAACCGGACAACACCTGATGGACGGTTACAAGCCGGTGTTATCCTCTTATCCGGACTCCAGTCCGTCTCCATTAGGCGGAGCAGGGGGGAATATGTTATCTGGGGGGCCAACGGCCTCTCTAGCGGGGTCTCCCCGGTCCTCCGCACGGCGCTACTCTGGCAGAGCCACCTGCGACTGTCCCAACTGTCAGGAGTCGGAAAGGCTGGGGCCGGCAGGAGCAAGTCTGCGGAGGAAAGGGCTCCATAGCTGTCACATTCCGGGCTGTGGAAAGGTTTACGGCAAAACGTCGCACCTCAAGGCGCACTTGAGGTGGCACACCGGAGAGAGACCGTTTGTGTGTAACTGGCTGTTTTGCGGGAAGAGGTTTACGCGCTCTGATGAGCTCCAGCGACACTTGCGCACGCACACCGGGGAGAAAAGATTCGCCTGTCCGGTCTGCAACAAGAGGTTTATGCGGAGCGACCATCTGAGTAAACACGTAAAGACTCACAGCGCCGGGGGCTCCGCCGGGTCTGGCTCTGGCAgcgggggaaagaggggaagcgATACCGACAGTGAGCACAGTGCACCGGGGAGCCCTCGATGCCATTCCCCCGACCTGTTGCAAGCTCCCGAATCTACCCCGGGTACGGGAAACGAACGGCCTTTCTAAACTCTCTCGACTAAGTATAATATCTGAGAAAACATATGATCTAAGGGAAATGGCTAAACTACAGTGGACATACGTCGAGTATGCGTAATTATGCTAATGTGTGCAAGTTGAGTTAATCAAGTGATTTAGACTACTGATCAAATGATATCTCCTAGTATCCTATTGATGACGTGGGGTGTACAGGTCAAATACAGTACTGGTAAAGTAATCCTGAAGGCACACTGGAACACTGGGGCACAATGTAAACACATCAGTGTTCTTCTAACGCACAGACTGATCCAACCGGGGACGCCTATACTTTGGTGTATGTACCCTTTTGAGTGTTTTTACGCAACCTGGTTATTACATGGGTATTACAATAAGCAAGAAATAGACAACGTTGTTCTATCACTTGGTGATAATATGTGTCCTGCAATATCGTGTTACTGCTGTGCTGACGTACTTTTATTCAAAACCAAACTGTGGCACTTTATTAGCCTGTTGAACACTGAAATGATCAGTACTCGTCCTTTTCGACGGCTCCTTTGTAAGAACAAATCACTGTAGCTGTTTATGTGCGGTGATCCACGTTTTGTTTATGTCCTGATCTACCCTATCGAACACATCGCCTGTTTATTATTAATAATGGAGGAAAAGTTATGTCACCCGTTGGTAAAACGCTCCACGGATACTATCAGAAAGAGCCTGTCCAAGTTTGTAATGAATACCTACATTTCACGTCACTGCAAGGCTGTATATAATGAGAAATGTAATAGCCTAGAAAATTATTCCGCACCAATGTAAAGGTGAGTTATGTATTTGTCCATGAGACGATTTTGTATAGTCATTTCTAGTTGTACATTTGGCTCTAGTAAATATCTGAACATGTACGGAAGTGTATTTTGacattattgttttattttgttttgtttgtttgtcaggaTATAAAAAATGTTATTGTGGGGAGTTATATTTAACCACGAGTTTTACTTGTATTTCTGAGTCTTTTAATAGACGCACTTTGAATTTATTTGTAAGAAGATTTCGAAATCATTCACTGTTTATTATTCTCATCTTTTAATTTAAGTAAGCATGTTGTAAAGTGACGTTAAATTCACAAGCATCATTTCTCAGAGACTGGCTTTCTAATTTAAGCCACTCAATAAAGTCGGTATGGA

Function

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function

KEGG:

id description
K09198 SP8; transcription factor Sp8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246218 lncRNA downstream 1980 2279296 ~ 2284314 (-) True G216202
TU246214 lncRNA downstream 8097 2276861 ~ 2278197 (-) True G216200
TU246211 lncRNA downstream 15463 2267715 ~ 2270831 (-) True G216199
TU246186 lncRNA downstream 36949 2247779 ~ 2249345 (-) True LOC110506602
TU246200 lncRNA downstream 43999 2241730 ~ 2242295 (-) True G216188
TU246248 lncRNA upstream 10940 2302946 ~ 2303148 (-) True G216216
TU246249 lncRNA upstream 12369 2304375 ~ 2304578 (-) True G216217
TU246257 lncRNA upstream 17157 2309163 ~ 2309366 (-) True G216225
TU246260 lncRNA upstream 21127 2313133 ~ 2313366 (-) True G216228
TU246306 lncRNA upstream 63666 2355672 ~ 2356333 (-) True G216258
XM_036965617.1 mRNA downstream 36785 2243487 ~ 2249509 (-) False LOC110506602
XM_036965622.1 mRNA downstream 36786 2243487 ~ 2249508 (-) False LOC110506602
XM_036965628.1 mRNA downstream 37096 2243487 ~ 2249198 (-) False LOC110506602
XM_036964001.1 mRNA downstream 56856 2225818 ~ 2229438 (-) False LOC118944471
XR_005040075.1 mRNA upstream 62277 2354283 ~ 2388299 (-) True LOC118944775
XM_036965683.1 mRNA upstream 169157 2461163 ~ 2507159 (-) False LOC118944776
XM_036965688.1 mRNA upstream 169157 2461163 ~ 2521910 (-) False LOC118944776
XM_036975424.1 mRNA upstream 254228 2546234 ~ 2553372 (-) True LOC118964348
XM_036965694.1 mRNA upstream 275034 2567040 ~ 2581440 (-) True LOC110519055
TU246045 other downstream 160942 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 164437 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 227865 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 333706 1926744 ~ 1952588 (-) True LOC110516567
TU245913 other downstream 623227 1661689 ~ 1663067 (-) False LOC110519742
TU246996 other upstream 444855 2736861 ~ 2738467 (-) True G216811
TU247125 other upstream 753999 3046005 ~ 3059744 (-) True G216902
TU247540 other upstream 1046180 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 1394396 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 2147090 4439096 ~ 4440061 (-) False G218073

Expression Profile