RNA id: TU246453


Basic Information

Item Value
RNA id TU246453
length 1705
lncRNA type sense_over
GC content 0.39
exon number 3
gene id LOC118944776
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2461163 ~ 2521910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATtgcgtttaccctccactacaccagtgatcctactctgagactcttcATGAATATGGACCCTGCTTCAGTCACTCTGTATTGATAGCTTCAGGTTGTTGTTATCTGCTTCCAAACAGGTGACCACTCCCTGattatctatctacacacaatgaaTGAAAGCATCAACCTTCTGGGGACTTGAACACCAGGACACTACACTTGACAGACCTCCAGTGCATGACCACCACACACTAGACTGCTGTTAAGCTAAATGGATTTAAACAACAATATTGaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcataaaTGTCACTTCCAAATACTGAAAAAAAGATCATTCAAAATATTTCAGAGTAAAGTGTGAGGTAATAAACCATCCTCGACAGCAGAAGGGTGCTGTTACAGTTATAGATAATGTAAtaaaccatcctcaacagtagaaGGGTTATGTTACAGGTATAGATAATGTAATAAACCATTCTCAACAGCATAAGGGTTATCTTACAGTTATAGATCATGTAAtaaaccatcctcaacagtagaaGGGTTATGTTACAGCTATAGATAATGTAATAAACCATCCTCGACAGCAGAAGGGTTTTGTTACAGCTATAGATAATGTAAtaaaccatcctcaacagtagaagggttatgttacagctatagataatgtaataaaccatcctcaacagtagaaGGGTTATGTTATAGTTATAGATAATGTAAtaaaccatcctcaacagtagaaGGGTTCAATTACAGTTACAGATCATGTAAtaaaccatcctcaacagtagtAGAAGGGTTATGGTCACAGTTATGGACTTAGCTGGTGGACTTAGATGTTTGGTCTTAGCTGTGGACACTCAGAGACGTATCTTGAGGCATCAGATCCTTTGCCTGTCATGTCTCTGTATCTGCACTATGAAGAAACAGCAATACACCAAGTCGACACTTTTGCCTTTGAACATTCTTGTCCAGTTAAAACGCCTTTGCCTTCTTCTTTCAGTGGCAGTATTAGTTAATCTTATAGAAACGGCTAATAAACTGTACATGTCTATGAGCCATCCACCTGCAGGATGTTGTGTCCTGTTCTAGAGAATCCTCTTGGTGAATGTTTCAGTGGTTTAGAAAAGAGATCAGACCCTGATATAGAGGTTCTTCAGTAGCACCACCAGTTCTCCTGTTGTGGATTCCCCtgatgtgtaatgtgtgtatcacAGAGATGAAACACTTCTATATCTATGGTGTGTATAGTGTTTTGAGGCAGGTCATGTACTATAGATTccatctatatactgtagtatgttGTGCGTTCCCTGGTTGGACATGGAGATTTGGAGAAGTATTTATTATTATGATAATAGACTTATTTATTTGCtcgttgtgcactacttttgaccaggtagtgtactatgtagggaatagggtatcatttgTGTCCTTTTTACCTGCCGTGGGGTTCCAATAGGTCAGGACCTGGTCTGCATGACGTGGTAAAGCCATGGATCGACCACCAAGTATAATATGCATGGAACAAAAAGCATTTCCTTGTGAAGTAGTGCTTTTCTACATGTCGCTACAACGCCCAAATCAGCATGTACTAACAAATATTATTTCAGAAAGGGAAACAAAAGCAATACCAAGTCactgctcttctctctcatcactctttATGCTTTTCgttttttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246321 lncRNA downstream 84448 2376533 ~ 2376768 (-) True G216271
TU246319 lncRNA downstream 85164 2375734 ~ 2376052 (-) True G216269
TU246306 lncRNA downstream 104883 2355672 ~ 2356333 (-) True G216258
TU246260 lncRNA downstream 147850 2313133 ~ 2313366 (-) True G216228
TU246257 lncRNA downstream 151850 2309163 ~ 2309366 (-) True G216225
TU246465 lncRNA upstream 20463 2483834 ~ 2484039 (-) True G216390
TU246466 lncRNA upstream 21151 2484522 ~ 2484973 (-) True G216391
TU246491 lncRNA upstream 60964 2524335 ~ 2524542 (-) True G216411
TU246556 lncRNA upstream 104726 2568097 ~ 2570484 (-) True G216464
TU246934 lncRNA upstream 165333 2628704 ~ 2628916 (-) True G216757
XR_005040075.1 mRNA downstream 72917 2354283 ~ 2388299 (-) True LOC118944775
XM_036965672.1 mRNA downstream 169210 2286294 ~ 2292006 (-) True sp8b
XM_021586367.2 mRNA downstream 171663 2286294 ~ 2289553 (-) False sp8b
XM_021586374.2 mRNA downstream 171670 2286294 ~ 2289546 (-) False sp8b
XM_036965617.1 mRNA downstream 211707 2243487 ~ 2249509 (-) False LOC110506602
XM_036975424.1 mRNA upstream 82863 2546234 ~ 2553372 (-) True LOC118964348
XM_036965694.1 mRNA upstream 103669 2567040 ~ 2581440 (-) True LOC110519055
XM_036965697.1 mRNA upstream 119869 2583240 ~ 2604766 (-) True LOC110520772
XM_036965710.1 mRNA upstream 392727 2856098 ~ 2869094 (-) False LOC110517891
XM_036965714.1 mRNA upstream 392727 2856098 ~ 2869094 (-) True LOC110517891
TU246045 other downstream 335864 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 339359 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 402787 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 508628 1926744 ~ 1952588 (-) True LOC110516567
TU245913 other downstream 798149 1661689 ~ 1663067 (-) False LOC110519742
TU246996 other upstream 273490 2736861 ~ 2738467 (-) True G216811
TU247125 other upstream 582634 3046005 ~ 3059744 (-) True G216902
TU247540 other upstream 874815 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 1223031 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 1975725 4439096 ~ 4440061 (-) False G218073

Expression Profile