RNA id: XM_036965694.1


Basic Information

Item Value
RNA id XM_036965694.1
length 2328
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110519055
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2567040 ~ 2581440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAGGCGTGTGCAATGCGCCTCACATCCATCCAAGACATTGATTATAATCGGGAACAGTTTGCCCTTATTAATAGCCTCCTTTGAACAGTGGATTACACATTCATTGGACTCCATAGAAAGTAGTCATATTTTCCATTTGCATTGAGCCTGTCCATCTGCGTGGAAGGAACCATGAGGTGTTTACAGGTGTCCAACCAAGGCCTGGAAGAAAGGATCCCTTCCTATGAGGAACTGGAAAAGCTGGAGAATGAGGAGGCTGGGGACAGACCCAAATGGGACAACAAGGCCCAGTACATGTTGACTATCGTAGGTTTCTGTGTGGGACTGGGGAACGTCTGGCGCTTCCCGTACCTTTGCCAGAGCCATGGGGGAGGTGCATTCATGATTCCTTTCCTGATCCTACTGGTTCTAGAAGGTGTTCCCCTGCTCCATCTGGAGTTTGCTATTGGTCAACGTCTAAGGAAAGGCAGTGTAGGTGTCTGGTCTGCCATCCATCCATACTTGACTGGCATTGGCATTGGATCCATGTGTGTGTCCTTTCTGGTCAGCCTGTACTACAACACCATCATGGCCTGGGTGATGTGGTACTTCTTTAACTCCTTCCAAGAGACGCTGCCTTGGAGCCAATGTCCGGTCAATGCCAACATGACAGGCCTGGTGTCAGAGTGTGAAAGAAGCTCTCCAGTGGATTACTATTGGTACAGAGAGACCCTGAACACCACTCCAGACATAGATAACACAGGTGGGCTACAGTGGTGGATGGTCCTATGCCATGTGTCTGCCTGGGCGTTGCTGTTTATCTGCATAAGTCGAGGCATTGAGACTACTGGGAAGGCTGTGTATATCACCTCAACATTACCTTATGTGGTGCTGACCATCTTTCTGATCAGAGGCTTGACCTTGAAAGGCTCCTTGAATGGAGTGAAGTTCCTCTTCACCCCAGATaTGAATGAACTAATGAACCCAACGACGTGGCTTGATGCGGGTGCCCAGGTTTTCTATTCATTCTCTTTGGCCTTTGGAGGTCTGCTGTCTTTCTCCAGCTACAACTCCGTGCATAATAACTGTGAACAGGATGCAGTCATCATCTCTATCGTGAACGGAGCCACTGCTGTCTACGCTGCAACAGTCATTTACACCATCATTGGCTTCCGAGCCACAGAGAAGTTTGATGACTGTATTTCTGGAAATATCCTGACCCTGCTGAATACATTTGATCTCCCAGAGGGCAACGTCACTGAGGGCAACTATGATCAGGTTCTTCATAGTCTCAATGGAACATATCCAGAGGTCATTCAGGGTCTCAACTTGAAGACCTGTGATTTGAATTCTTTCCTTAGTGAGGGGGTTGAAGGAACTGGTCTGGCCTTTATCGTGTTCACAGAGGCCATCACTAAGATGCCTGTATCTCCTGTTTGGTCAGTCTTGTTCTTCATCATGCTCTTCTGTCTCGGCCTGTCCTCCATGTTTGGCAATATCGAAGGAGTTCTGGTACCACTTCAGGACCTGGGTGTTTTCCCCAAGAGTTGGCCCAAAGAAGCCATCGCTGGGATAACATGTGTCCTCTGCTGCCTTGTTGGATTAATATTTGTTCAAGGCTCAGGGAACTACTGGCTGTCCCTCTTTGACAGCTATGGCGGGTCCATTCCTCTGCTGATCATTGCATTCTGTGAGATGGTCGGGGTTGTGTACCTCTATGGTATTGATAGGTTCAACGATGATATTGAGTTCATGATCGGCCACAAGCCCAACCTCTTCTGGCAGATCACATGGAGATTTGTCAGCCCCGCCATCATGTTTGTCATCTTTGTGTTCTACTTTATCACTAAAGTCCAAGAAACACCCATGTACAAAGCCTGGAATCCTGAATCGGACAACTTCCCTACATTGGAGGAGAAGGAATATCCAACCTGGATCTTTGCTATAATCTTCATCCTGGCAGGAATCCCAGGTCTTTCTGTACCTCTTACGGCTATTTACAAATGTTTGAGGAACCGCTGCTGCAAGAAGGATAATGAGTTTAAACAAGATGACTTAAACACTATTGCCAAGCAAGTTCAACTGACGGATGAGGCTACCAAGAACAAACCAGACATCCCAGAGACAGCAGATGGAAGATAGTGATCAAATCACTAGCCCATTGTTGTTTTCATGACAGGCCTCCATTTATTTCCTTCATGCCACTGATAGCTGAAAGGAGTAGAAACGTTTGATAGTTTTACAAGGTTGTATGGATGAGGTATGACAGAAAAGCCATCAAAGCTTACATTGATTGACACATTGTTGTAATTTTTGTGCTGAATAGTCAACATTAAACTAAATTATA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05334 SLC6A19; solute carrier family 6 (neurotransmitter transporter) member 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246491 lncRNA downstream 42498 2524335 ~ 2524542 (-) True G216411
TU246466 lncRNA downstream 82067 2484522 ~ 2484973 (-) True G216391
TU246465 lncRNA downstream 83001 2483834 ~ 2484039 (-) True G216390
TU246453 lncRNA downstream 103669 2461216 ~ 2463371 (-) True LOC118944776
TU246321 lncRNA downstream 190272 2376533 ~ 2376768 (-) True G216271
TU246934 lncRNA upstream 47264 2628704 ~ 2628916 (-) True G216757
TU246945 lncRNA upstream 67477 2648917 ~ 2649344 (-) True G216765
TU246947 lncRNA upstream 72838 2654278 ~ 2654615 (-) True G216767
TU246948 lncRNA upstream 73763 2655203 ~ 2655421 (-) True G216768
TU246957 lncRNA upstream 83724 2665164 ~ 2665590 (-) True G216775
XM_036975424.1 mRNA downstream 13668 2546234 ~ 2553372 (-) True LOC118964348
XM_036965688.1 mRNA downstream 45130 2461163 ~ 2521910 (-) False LOC118944776
XM_036965683.1 mRNA downstream 59881 2461163 ~ 2507159 (-) False LOC118944776
XR_005040075.1 mRNA downstream 178741 2354283 ~ 2388299 (-) True LOC118944775
XM_036965672.1 mRNA downstream 275034 2286294 ~ 2292006 (-) True sp8b
XM_036965697.1 mRNA upstream 1800 2583240 ~ 2604766 (-) True LOC110520772
XM_036965710.1 mRNA upstream 274658 2856098 ~ 2869094 (-) False LOC110517891
XM_036965714.1 mRNA upstream 274658 2856098 ~ 2869094 (-) True LOC110517891
NM_001124385.1 mRNA upstream 307631 2889071 ~ 2916338 (-) False c4b
XM_036963128.1 mRNA upstream 307631 2889071 ~ 2916355 (-) False c4b
TU246045 other downstream 441688 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 445183 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 508611 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 614452 1926744 ~ 1952588 (-) True LOC110516567
TU245913 other downstream 903973 1661689 ~ 1663067 (-) False LOC110519742
TU246996 other upstream 155421 2736861 ~ 2738467 (-) True G216811
TU247125 other upstream 464565 3046005 ~ 3059744 (-) True G216902
TU247540 other upstream 756746 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 1104962 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 1857656 4439096 ~ 4440061 (-) False G218073

Expression Profile