RNA id: XM_036965707.1


Basic Information

Item Value
RNA id XM_036965707.1
length 9887
RNA type mRNA
GC content 0.49
exon number 21
gene id fhod3b
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2606023 ~ 2853339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactctctctctgtcctttgaatctctgtctttctctctctatccctctttctcctctgggAGAGAGTGTCTCTGCATTTCCTGCTCTAACCAATtattctctcctctgctccttctTCCTGGCCAAGTGTAACACACAGCATGGTTTTGATCATGTCCCGATCAGGCATTCACTTTATTACACACAGATCTTCACATCCCTTCCTtttttttctctgtttctctgtctttccttctcttttctgGCTTTACATTCTGACTGTACCATGCCTTGGCATTATTCACCCCTACAAGTACAACCCCTGTTCCCTTATTTCCTATACATCCTCTATCAGGCCATTATCTCAACCACTCAAGGCTGTCAGAGCAGGAAAACCTCTTATCGGGCACTATttccgTCTGGTAGTGAAGACAGCTCTGAAACTGTTACTGGTGTTTGTGGAGTACACTGAACCCAACACTGCCCTGCTCATCCATGCTGTCAACACCGTGGACACCAAGAGAGGCTGTAAGCTGTGGTCCAATGCCATGGAGATTCTGGAGGAGAAGGATGGGGTGGACACAGAGCTGCTGGTGTATGCCATGACCCTCATCAACAAGactcTAGCGGGCCTGCCTGACCAGGACTCATTCTATGACGTGGTGGACTGTTTGGAGGAGCAGGGCATGGAGGCCATGTCTCAGAGACACCGTAGCAGGAAGGGAACAGACCTGGACCTCATGGAGCAGTTTAACATCTACGAGACTGCTCTGCGCCATGAGGACGGGGACGACGAGAGCCAGCCACCTACCGTGGGTCGGAAGAACCGGCGGCGTGCCAGCGTGGGGGGTACCAACGACCGGCGAGGCCTGGAGAGGAGACGCAGCCGGAGACACTccctccagaacgggagaggacTCACCTCAGCCCCCGCTTCCCCCAGCAGCCCTCACTCTCATGGAGGACACAACGGTAGCTTCCTGCCCTTCGGAGGCCAGGGCATTGACGACGTCAGCGAAAGCCGACACATAGGCCACGTCATGGCGCTCCCTGGCAGGTCCCAGGGTGTAGCCAGCGCCAGCGCCCCCACCACCCCTGTACACCGCTCCCAGGGTGTTGCCAGCGCCCCCACCACCCCTGTACACCGCACCTTTGCCACATCAGGGgcaccacagctggactccaagtCTGACAGACCTTCTCTGGGGAGCTTGTTGTCCTCCTCCTACAGACAACACCAGGAGTCtctgactgcagagagagagaggaggagacaagagAGGGAGGAACGACTGCTGAAAatcgagagggaggagaggacccGCTTCAATCGGGATTACATGGACAAGAGGGAAGAGACAAGACAGGCCAGAGAAGAGAGATATAAGTGCGTTGAGAGGCTCGCAGCAGAGGagtatgagaaagagagagagcgcacgaGAGCGCCACCCAGGGGGCGCACAGAGATCACCCTGAGCCTGAGCCCCACCCCCTCCAGTCGCTCCGCCTCCCCCCGCTGTGCCACGCCCTCCTCCATTGCCTCTCCGGAAGACGCTGGCACCATTCCATCCCAGACATCCCAGACATCCCAGACGCAGGGAAGTGAAGTAGACGTAGAGCCAAGCCGTGACCTTCAGACTAGAACTACAAGTCCAGCGCCAGAGTTAATAGTATCAGGACCTTCTCCAGAACCCACAGAGCCCCCCTCCCAAACCCCCTCCCAAACTCCCCCGGCGCCAGCCGAGgagcaggcagagacagagacgcaGACAGAGAAGCAGGAAGTAGCTGAAGTTGAGTCCAAGCAGGAAGTACTAGAGCTAGTGGAGTTAGCGGTAGATGAACAGACACAGGGTAAAGAGCAAGAAgaaagtgaggaggaggaggagggtaaggaggaagagagacagtcagggaatgaggtagagggagaagagaaggtagaggtagagggagaagaggtggagaTAGAAGATGTAGAAGTggtagagatagaggtggaggaggagggagagagggagcaggctgcgtcggaggagagggaggtggaggagaggctGGTCCTCCTcagtgagaaggagaggcagaatgAGGAAGTGAATGAGAAGGACAACTGTTCTGCCTCCAGTATCTCCTCAGCCAGTAGcactctggagagagaggagagggaggagaaagtcaacagcaaccttgaaCCAGGCCAGTGCATTAAGGAGGAAGACGTGAACGGGCAGTGCAGCAAGATCCTCAACAGCAAGCGCTTCATGCTGGACATGCTCTATGCCCAGAACAAGACCACTGCCGACGAGGACGAAGAGAAggcgggagagacagaacagacggAGAAATGCAAAGAGGGGATGGAGACGTCATCGCTAGAGGGTCAGGACGGGTCGTCGGTGGCCAGCTTAGCCAGTCGTATCTCTACACTGGAGGCCAGCAGGCAGGCCTGCGAGGAGAACGTCAAGAAGATGGAGGTGCAACACCTGGAGAACCAGGGGAGCGTCAGGGCCGCGGCCGAGAAATTTGGAGACCTTGTTAAAAGCCTTGTGTCGCCTCACGAGCTGGAGGCATTGGAGAAGCAGCAGCAAGGGCAGCTTCAACCAGATAAAGACAAAGCTCCTCCGGCCCCGTCCTCTTCTCCCCTACCTCCTAAGAAGGAGTCAGATTATATCTGGGACCAGCTGATGGCAGCCCCCAGGGAGCTGCGGATTAAAGAGATGGACTTTACAGACCTGGCAGACGAGGATGATCTGGACATCTTAGACGTGGACAGTGTGCTGATGGGCTCCAGTGACCTGAtgatccctccccctcctccctgtctctccaccctgccccctccccctcccctgggCCTGTTCGGCTGCCCCCCGCCCCCTCCTGTCCCTGGCATGATGCCCCCTCCCCCGCGCTTCATGCCCCCCGGACCCACCCAGCCCTACCCGGGGTCCCCCCAGCTGAGCCGAGGGACAGGGGAGCCCCCTCTGTtccaaaagaagaagaagactatCCGTCTCTTCTGGAACGAGGTAAGGCCCATGGACGGCCAGTACAGGAACCACAAGCGTTGTAGAGAGTCTCTCTGGTCCAAACTGGAGCCGGTCAAAGTGGACACGTCCAAGCTGGAACACCTGTTTGAAACCAAGTCCAAGGAGCTGCCTGTTACCAAGAAAACAGCAGTGGATGGGAAACGACAAGAGATTATTGTCCTGGACTCCAAACGGAGCAATGCCATCAACATCGGGCTGACCGTCCTCCCCCCTCCCCGCACCATCAAGACAGCCATCCTCAACTTCGACGAGTACGCTTTGAACAAGGAGGGGATCGAGAAAATCCTGACGATGATCCCGACggaggaggagaagcagaggATCCAGGATGCTCAGCTGGTGAACCCTGACGTCCCCCTGGGATCAGCAGAGCAGTTCCTCCTCACCCTGTCCTCCATCACAGAGCTGTCCGCCCGGCTGCAGCTCTGGGCCTTCAAGATGGACTACGAGGTCACGGAGAAGGAAGTGGCAGAGCCTCTGCAGGACCTTAAGGAAGGGATGGACCAACTGGAGAAGAACAAGACGCTGCGTTACATCCTGTCCACGCTGCTGGCTATAGGCAACTTCCTTAACGGATCCAACGCGAAGGGCTTCGAGCTGGGTTACCTGGAGAAGGTTCCGGAGGTAAAGGACACGGTTCATAAGCAGTCTCTACTGCACCATGCCTGTTCCATTGTGGTGGAGAAGTTTCCAGACAGCTCAGACCTGTACTCTGAGATAGGAGCCATCACCCGCTCGGCTAAGGTGGACTTCGACCAGCTCCAAGACAACCTGAGCCAGATGGAGCGACGCTGCAAAGCATCGTGGGACCACCTCAAGGTCATCGCCAAGCACGAGATGAAGCCTGCGCTCAAACAGAAGATGTCTGACTTCCTAAAGGACTGTGCAGAGAGAATCATCATCTTGAAGATAGTCCATCGGAGAATTATCAACCGGTTCCATGCCTTCCTGTTGTTCCTGGGCCATCCAGCGTACGCTGTGCGGGAGGTCAGCATCCACCGCTTTAGTAAGATCCTCAGTGAGTTTGCCCTGGAGTACCGGACAACACGGGAACGCGTCCTGCAACAAAAACAGAAGAGGGCCAACCACAGAGAGAGGAACAAGACCAGAGGAAAGATGATCACAGATAGTGAGGATGAAGAGGATGGTaagGATGGAAAGTTTGGCGGTAGCGCCCCGGGGCCTGTAAGCCAGGAGGGCGTGCTGACGCAGGGTCTGCAGTACGCTGAGGATGCAGCGGAGCATGAGAACATGAAGGCAGTGCTGAAGAGCAGCTTGCAGGGCTGCAGTGACAGTGGAGCGTCCACCGTGCCAGGCCTACGTACACGCACCAGAGCCAGCAGGCCAGGCCGTGTGGGTCCTTGGGGCTCATCAGTGATTGAAGACCCACCTAATTGCACAGAGACAGACGCTGCAGATGAGATCATGGAGCGCATCGTCAGGTCAGCCACTCAGGGGCCCAGGACACGGACAGAGCCTCGCGAGAGGAAGAGGTCCAGAGCCAACCGCAAGTCACTGAGAAGAACACTGAAAAGCGGTCTGACGCCAGAGGAGGCCAATGCCTTGGGGTTGTCCAGTGGTTCAGAGATGGCTGTGTGACAGGAAGAGAAGTAGAGCTGGATCcggcagcacagcacacacagacacctggGAAACCCTCTTACCGCCCGCCCCGCCCTtcactgacccctgacctctaacccctgctcatccagccagccagtcaactgCTGCACCATAGCTTCGCTTGGTCTTTCCCCTGGTTCAGCTTTATGATGACTGTAGCTCATCTTCCTGTCTGTGGTTTGTGCAGGTAGCTGTGACACAGTGTTCCACCTGGTTAAGATGTTCAGGAAGAGACCATGAGGAATATGGTCCTCATCCAGGATAATAGATGGTTTTCAGTGGAACAAAGTGGTATTCGTATAGGGGCAGTTAAAGGGGTTCAGTGATCCAGCTGACtcagctccacacacacacactcaggtaaAGTTCAGCATCCAAACCACTACACTATGCTGCTGTGCCGACTTGAGTGTTTCTTAATGGTGTTGTTCCAATCAGTTGTTTCTCCTAACCTTTGAATATGAGGCTGAGGCCTTTGAGGAACAGCTCACATCCCAACTGTAAGTCTTAATCACTTGATGAAGCCCACAGTGACCACATGACTAGTGGTGAATCTCAGttgtatttccttgattcctcgtgTCTTCTATCCTCACCTGTCTACACAAGGCATTGGAGGACTAGATCTGAGGTTCGTCCTCCCTAACCTTTTCCTCAATTGAGATTCACCCTATGACTGAAAGATACAAACTGAGACTTACCTACACAGAAGACATTTAGCCTCAGGACTTCTAAAGGGAGGGACTTGCGAGTGCTTGAATCACTGTGGACTTGTGTCTGAACCAAAAAGGCCTCGGAGTTGAATAGTAAAGAAGTTAGCATTGACGCTAAATAAGTTAGCATTGACGCTAAATAAGTTAGCATTGATGCTAAATTAGTTAGCATCGATGCTAAATAAGTTAGCATTGATGTTAAAGACGTTAACATTGATGTTAAAGACGTTAGCATTGATGTTATCTATCCCCACTTATGATGAGCTtgtgtgttgggcttggtgtcaGATAGTATTTTTAGTTTGAACAATTTttgtttatataaaaaaaaaaaatgtctgtgtCCACAGGCTGTTTTGTTCTACTATACTACTGTGGTAGTTTTTTGGGTTTTAAAATACTTTAATGTGTGAGAAAAAGGTGCTCAGAGAAGGAATATTTGCACTGGATGTAGAAGTTGGATATTTAGAGGAAAGGAAGGGGAAATCCTTGACACACACTGATGTACCAATCAGATATCAGATGAATGAAAGAATTCCCCCAGACAGAACCAATAATGAAACAGTAGCACAACTGATTATACACTCTAATTTCAGAGGAAAAGTGAACATATTCCTTTGACTTCTGCAAACTAAAATGTTTCCAATTTTGCATGTTGTTGATTCAGTTGGATTTTATACCGATGGAACAAACTGGAATTCCAAGAGGACACACCATGATGTGTTAAGAGGGAAGGTATCATTTACTACATACAATTGAATTACTGGTTTCCACTTTTAAAAAAACACATAGCATATCAGAGTCATCAACGTTGGTGAGAACAGTCTGTGAGCGGACAAGTGTACAGAAGGGACGATGCTACTGGGTCCAGACAGACTGACGTCTGTCAATCACGCGTAGCGAATGTTACAGCTTTAGCCTATAGGCCTGCCTACAACATACATGTTCCAGCTTTAACCTATAGGCCTGCCTAGTACCTACAATTACACACGTGTTGCATGCATGACACCAGTGTTACGCAAGCTCCTGCTGTTGTTCGCTGCAAAGCCTTCTTCTATGGTTGAGACATACTTATTGTGGAGTGGTAGAACCGACAGGGAGATATATTTACACTAGTTACATTTACgtactctctctttactctctgtgTCAAAGAGTTAGGCAACATTTAACAATTGTTTAAAAAAGTAAGAGATGAATAATTGGTTATTATAGAAAAACGATATGAGCTTCAACTGAATGAGTGCCTTTTATAGACAAGTCTATTTATTCAGTAATGTTCAGGGAGATATTTGTTACAGAAAATGTTACTGTGTGTAATGAAAGGACTTCCTCCTTAGGTCAATTCAACAGCTGTGACTTCCTGTTTTCATTCTTTCCTAGATGAATACATGTCAGTACTATGTTCCATGGCTTTATGTCTTGGAAACAGTTCTCCTCTTCCATTTGCACATTGCAGTTTTATTTCGAATCACAACTAAACTAGGGTTATAGCTAATTGTCTAATGACAATATTTCCATTttagcagttttgtcacaaaaaatgATCTACAAAAAGATATTAGTTGTTTCCATTTGCCTTAATGTAGAATAAGGGCATATAGTATATCTGAACGTTCCTACACTGTTGACTTTTATTGAGGTGTAGTGGTTACAGTCAGCTAGATAGCTCGTTTTTTAAAGTGCATAATTCCAGTTTACATTTGGAATTGTGTAGAGAATTGTATGACGATTCTACACAGTCACAAACATTCACTGTGATGGAAACAGCCATTGTCGACTAAACATGAAAGAATATATGCTTGCAGCAACACAAGCCACAACAAAACAGTCACACACCTACAAGTATATGTCTTTCTCATGGAGAACTTACAATTTGGTATGAAACTATCCAGCACCTTATACACCATTTGTAGCATGCGTCTTTCATTGAGGAAAAGCAGAACATTAACAGTGAGAAAGTATATTCTTTCAGCCTTTTTCTCAGATGGTCATTTGGAGTATTGTAACTCTGAGTACATGTAAAGTAATAATGGGGGAAGAATGCTGTAAAATGATGTAAATGTCACAACGATGTGTTTTATGTCTTTCACTTGTTGGTATTTTGTATAGAATAGTGTATTATAGGTTAAACAAAGCAGTGTTATTCTATGGAAATTGTAATTTAAGTGAAAACCAAACCATGCATGGTTTTAAAAAATGTCTACAGATGAGGCGTGTCACGTCATGTTATGGATAAAGGGAGATTTTCAGAGGCTTTAGCGTTTGTTATGTTTTATTGTTTCCCCTCCCCACATGACTTGAAACACATTAGGATAGACGGAGTGGTCGATGTAACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTTTAGCGTGATTGAAAATGTTCCTGCATTAGCATagactgcattcatggtaaacactgcatatgtcggctccATCTGAAAGGATGccatctgtaacgcttcagcccCTAGTACTCCTATGGAACCTTCAGCAGCCTTTCATTACATTGCACTCAATAAAACAtggagtgtgtcccaaatggcaccctattccctatagagtgcactacttcttcttcttttttttttttaccaggacccatagagtccaaaagtagtgtactgtgtagggaatggggtgccatttgggatgcagaccatgCTTTCTGTGATTGGCTATATTATCTCCTTCTCCCCCACTGCTGTACTGTAAGTCAGTGTGGGACTTGGACACAAGCACATCCAGACTCAGTGAGCTTTTCTTGCGTCTTCGCCCCTCTAACAACAACTGTATGTATGAACATCTGGCAATAAAAGATCTCTTAAGAAACA

Function

GO: NA

KEGG:

id description
K23939 FHOD3, FHOS2; FH1/FH2 domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246683 lncRNA upstream 29653 2772480 ~ 2775679 (+) True G216571
TU246673 lncRNA upstream 59166 2745814 ~ 2746166 (+) True G216564
TU246658 lncRNA upstream 86034 2717683 ~ 2719298 (+) True G216550
TU246656 lncRNA upstream 87869 2717169 ~ 2717463 (+) True G216549
TU246650 lncRNA upstream 92088 2713027 ~ 2713244 (+) True G216543
TU246572 lncRNA downstream 35718 2889057 ~ 2901408 (+) False G216479
TU246574 lncRNA downstream 35718 2889057 ~ 2901408 (+) False G216479
TU246575 lncRNA downstream 35718 2889057 ~ 2901408 (+) True G216479
TU246721 lncRNA downstream 53745 2907084 ~ 2981672 (+) True G216602
TU246731 lncRNA downstream 106842 2960181 ~ 2961034 (+) True G216609
XR_005039814.1 mRNA upstream 386200 2414471 ~ 2419132 (+) True LOC118944474
XM_036965630.1 mRNA upstream 521018 2258551 ~ 2284314 (+) False abcb5
XM_036965722.1 mRNA downstream 18073 2871412 ~ 2883105 (+) False LOC110517892
XM_036965719.1 mRNA downstream 18080 2871419 ~ 2883602 (+) False LOC110517892
XM_036965720.1 mRNA downstream 18080 2871419 ~ 2883602 (+) True LOC110517892
XM_036965726.1 mRNA downstream 71102 2924441 ~ 2943873 (+) False LOC110520727
XM_036965729.1 mRNA downstream 71102 2924441 ~ 2943873 (+) False LOC110520727
TU246526 other upstream 230433 2572395 ~ 2574899 (+) False G216438
TU246414 other upstream 342588 2461217 ~ 2462744 (+) True G216353
TU245815 other upstream 819536 1984983 ~ 1985796 (+) True ahr1a
TU245816 other upstream 839280 1960868 ~ 1966052 (+) False ahr1a
TU245773 other upstream 1000077 1804388 ~ 1805255 (+) True G215843
TU246778 other downstream 163825 3017164 ~ 3019834 (+) False LOC110506718
TU246775 other downstream 186647 3039986 ~ 3041517 (+) True G216640
TU246830 other downstream 253015 3106354 ~ 3108233 (+) False G216673
TU246814 other downstream 253272 3106611 ~ 3108233 (+) False G216673
TU247395 other downstream 626977 3480316 ~ 3481536 (+) True G217146

Expression Profile