RNA id: XM_036965720.1


Basic Information

Item Value
RNA id XM_036965720.1
length 9051
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110517892
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2871412 ~ 2883602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGACCAGCAAAagacagtaactacagtatattgtcaCCTGTTTGGGAAGGTATCTTCATACAGAGTAATCTGAATTGCTCAACCTCATTCCTAACACCTTACTAATGACTTGGACTGTCAACTAGCATTCTATTTTTCAATACAAAATGGACCGTTCTGGGACAATTGCTTTTTATCTGTAGGCGAATAGGCCTAGCAATGACTTTTCCATTATCAGTGTATCTCAACAGTTTCACACTGTGATTATGTACATTTTGTCAGTTATCATGAGGTTTTTGGTGACACACTTCCGTGTTCTTGACTGACATGTTTTTCTTACCACCTGTCACAGCCTCATCATGTGGGCTCTATGTATAAGAGTGACAGATCTAAACCTGATGCACTACCTTGTCAGGGAACATTGCTACAAGGGTGAACCTAAAACATGTGTTATCTTTATAAACAAGAACGGTCACATTCTTAAACACCTACTACTAGGGAGTCTTAATAAGTCAGTCAACTAAGTTACAACGAGTATCAGTTGCCTCCATTTCAGATGATTTTGTACTCGACTAGAACACAGGGTGTCACAGTTTGTATGTTTTGGTTAGATCTGAACGTTAGTAATGGACAGTTCCAACGATTTCAGTTCGACCACCCATTCTGAAGACTAGTGAAAAGCTACAGTCATGATGAGGAGCACTGCACTGTTCCGTCTCCTGTCCGTCTCAGGACTGTGTTACCTGACTCTGAGTATCTCCCCTCCTCAGTATCACTATATTAGCCTTCAAATGAATTATTGCCAAGCCCAGACTTACTGTAGAGACATTTACACTGACTTGGCAACCATCTACAATTCAGGGGATCTGGATAGACTTGTACAATTGGTACCGAATGGTACAGCCAGTGTCTGGATAGGACTGGAGTTTGGAGATGAATTTGAGTGGCACTGGTCATTACCAGATCAGAGAAAGATTGAGTTTTTCAACTGGAGGGCAGCAGAGCCGAAGCAAAACAATACTCAAGACAGCTGTGCTGCAATGGATCCAAACGGACAGTGGTTTGAGGATAACTGCCAAATCAAAAGAGGTTTTGTTTGCTTTGATGGGAAAAACGCTAGTAACAGTCACATCTTCATTGATGACAGCAAGACTTGGAGAGAGGCTCAAGACCACTGCCGGGGTACGTACACAGACCTGGCCAGCATACGGTCCAGAGAGGAAAACCATCACGTCCAGAACATGTCACTGTCCCAGAGCATGTGGATTGGTCTCTTCAAAGACccatggaagtggtcagatgggAGCAACTCCTCATACCGCTTCTGGAAGACCAATCAGCCTGACAACTTCAGAGGGGCCCAGAACTGTACTTCTGTTATACTCAACGATAACAAGTGGAATGACCAGTGGTGCAACATCAGTTGGGGGTTTGTCTGCCATGGTGAAATGAAGCGACCGACTACCCAGATGCCACCTACAACCACACATACTGGGCCACAAACAACTCCTCCCGCAGCTACTGTGCTTGCCACTGCTGAACAGTCAACTACAGATGAAGTAACACCTAAGCTAACAACTACCCATTTTGTGCAGATCCAACATATTCTTTTAGATCTTTTACCAACCTCTGACCAAGCGACTACTGTAGGCTTACCTGTTCAAAACACTCCATCTACACCAGTACCAACTACATTCACTACCACAGACCAAGGTTCAATTGAACAGTTATCTACAAAACACCTAACTACCAAACATGGTACTACTGTTAAAAAACCAACTACATTCAATATCACAGTAAATGTTACTAAACAGTTAACTACTGAACGCCTAACGTCTGACCAAGCGACTATTGTACCTGTTCAAAGCAATATCTCTATGCCTGTACCAACTTCATTGATTTCCACAGAACATGTTTCAACTGAACAGTTAGCTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCAATGCCTGTACCAACTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCAATACCACAGTGCATGTTTCTACTGACCACACAAGCTCTGATCAAGCAATTACTGAACCTGTTCAAAACACTCCTACATCTGTACCAGCTATATTCACTACCACAGACCAAGTGACTACTAGTTACATACCTACAAGTGCCTCGACTGCACCTGTCCAAAATAATCCCTCATCGTCTGTACAaactacattcaacaccacagaacATGTTTCAACTGAACAGTTAACTACTGAACatctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACCAACCACATTCAACACAACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACCAACCACATTCAACACAACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTCTACCAACTACATTCACTACCACAGAACATACTTCACCAGAACAGTTAACTACTGaacacctaacctctgacccactgactactGTACCTGTTAAAAAACCAACTACATCCAATACCACAGTGCGTGTTTCTACTGAAGAGGCAACTCCTGAACGCTCAACCGCTAACCAAGCCACTACTGCTTACTTACCTGAAACAACTGTTGGAAACACTCCCTCAACACCAGTACCAACTACGTTCAATACCACAGTGCATGTTTCTACTGaacacctaacctctgacccactgactactGTACTTGTTCAATGCATTATCTCATCGTCTGCACCAACTAACATAGAACATGCTTCAACTGAAATGTTAACTACTGGTTACTCAACTAGAGAGGAAGCAACTACTGGTTACTTACCTACAAGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCACATTCAATACCACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactacGGTACCTGTTCAAAACACCCCCTCAACACCAGTACCAACTACATCCAATACCACAGTGCGTGTTTCTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACGACCTCAACGCCTGTACCAACTACATCCAATACCACAGTGCGTGTTTCTACTGAAGAGGCAACTCCTGAACGCTCAACAGCTAACCAAGCCACTACTGCTTACTTACCTGAAACAACTGGACCTGTTGGAAACACTCCCTCAACACCAGTACCAACTGCGTTCAATACCACAGTGCATGTTTCTACTGAACACCTAACCTCTGACTCActgactactgtacctgttcaaagCATTATCTCATCGTCTGCACCAACTACCACAGAACATGTTTCAACTGAAATGTTAACTACTGGATACTCAACTAGAGAGGAAGCAACTACTGGTTACTTACCTACAAGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCCCATTCAATACCACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCAACCCCTCAACACCTGTACCaactacattcaacaccacagaacATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaACCAACTACATTCAATATCACAGTAAATGTTACTAAACAGTTGACTAGTGAACGCCTAACGTCTGACCAAGCGACTATTGTACCTGTTCAAAGCAATATCTCTATATCTGTACCAGCTTCATTGATTTCCACAGAACATGTTTCATCTGAACAGTTAGCTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCAATGCCTGTACCAACTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCATTACCACAGTGCATGGTTCTACTGAACACACAAGCTCTGATCAAGCAATTACTGAACCTGTTCAAAACACTCCTACATCTGTACCAGTAATATTCACTACCACAGACCAAGTGACTACTAGTTACATACCTACAAGTGCTATGACTGCACCTGTCCAAAATACTTCCTCATCGTCTGTACAAACTACATTCACTACCACAGAACATACTTCACCAGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTGTACCaactacattcaacaccacagaacATGCTTCAACTGAACAGTTAACTACTGAactcctaacctctgacccactgactactGTACCTGTTAAAAAACCAACTACATCCAATACCACAGTGCGTGTTTCTACTGAAGAGGCAACTCCTGAACGCTCAACCGCTAACCAAGCCACTACTGCTTACTTACCTGCAACAACTGTTGGAAACACTCCCTCAACACCAGTACCAACTACGTTCAATACCACAGTGCATGTTTCTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCTCTACCAACTACATTCACTACCACAGAACATACTTCACCAGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCCGTCCCTCAACACCAGTACAAACTACATTCAACACAACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactGTACCTGTTAAAAAACCAACTACATCCAATACCACAGTGCGTGTTTCTACTGAAGAGGCAACTCCTGAACGCTCAACCGCTAACCAAGCCACTACTGCTTACTTACCTGAAACAACTGTTGGAAACACTCCCTCAACACCAGTACCAACTACGTTCAATACCACAGTGCATGTTTCTACTGAACACCTAACCTCTGACTCGctgactactgtacctgttcaaagCATTATCTCATCGTCTGCACCAACTACCACAGAACATGCTTCAACTGAAATGTTAACTACTGAACAcgtaacctctgacccactgactactgtacctgttcaaagCATTATCTCATCGTCTGCACCAACTACCACAGAACATGCTTCAACTGAAATGTTAACTACTGGATACTCAACTAGAGAGGCAGCAACTACTGGTTACTTACCTACAAGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCCCATTCAATACCACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCCGTCCCTCAACACCAGTACAAACTACATTCAACACAACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactGTACCTGTTAAAAAACCAACTACATCCAATACCACAGTGCGTGTTTCTACTGAAGAGGCAACTCCTGAACGCTCAACAGCTAACCAAGCCACTACTGCTTACTTACCTGAAACAACTGTTGGAAACACTCCCTCAACACCAGTACCAACTACGTTCAATACCACAGTGCATGTTTCTACTGAACACCTAACCTCTGACTCGctgactactgtacctgttcaaagCATTATCTCATCGTCTGCACCAACTACCACAGAACATGCTTCAACTGAAATGTTAACTACTGAACACCTAACCTCTGACTCActgactactgtacctgttcaaagCATTATCTCATCGTCTGCACCAACTACCACAGAACATGCTTCAACTGAAATGTTAACTACTGAACAcgtaacctctgacccactgactactGTACCTGTACAAAGCATTATCTCATCGTCTGCACCAACTACCACAGAACATGTTTCAACTGAAATGTTAACTACTGAACAcgtaacctctgacccactgactgCTGTACCTGTTCAAAGCATTATCTCATTGTCTGCACCAACTAACACAGAACATGCTTCAACTGAAATGTTAACTACTGGATACTCAACTAGAGAGGAAGCAACTACTGGTTACTTACCTACAAGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCCCATTCAATACCACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaACCAACTACATTCAATATCACAGTAAATGTTACTAAACAGTTGACTACTGAACGCCTAACGTCTGACCAAGCGACTATTGTACCTGTTCAAAGCAATATCTCTATATCTGTACCAACTTCATTGATTTCCACAGAACATGTTTCAACTGAACAGTTAGCTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCAATGCCTGTACCAACTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCAATACCACAGTGCATGTTTCTACTGAACACACAAGCTCTGATCAAGCAATTACTGAACCTGTTCAAAACACTCCTACATCTGTACCAGCTATATTCACTACCACAGACCAAGTGACTACTAGTTACATACCTACAAGTGCCTCGACTGCACCTGTCCAAAATACTCCCTCATCGTCTGTACAAACTACATTCAATACCACAGAACATGTTTCAACTGAACAGTTAACTACTGAACatctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACCAACCACATTCAACACAACAGAACATGCTTCAACTGAAATGTTAACTACTGGATACTCAACTAGAGAGGAAGCAACTACTGGTTACTTACCTATAAGTGCTTCTGCTTCAAACGTCCAAAACAGTCCCTCAACACCAGTACCAACCACATTCAACACAACAGAACATGCTTCACCAGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCAATCCCTCAACACCAGTACCAACCACATTCAACACAACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactgtacctgttcaaaaCACCCCCTCAACACCAGTACCAACTACATTAATTTCCACAGAACATGCTTCAACTGAACAGTTAACTACTGaacacctaacctctgacccactgactactGAACCTGTTCAAAAACCAACTACATTCAATATCACAGTAAATGTTACTAAACAGTTGACTACTGAACGCCTAACGTCTGACCAAGCGACTATTGTACCTGTTCAAAGCAATATCTCTATATCTGTACCAACTTCATTGATTTCCACAGAACATGTTTCAACTGAACAGTTAGCTAATGaacacctaacctctgacccagcaactactgtacctgttcaaagCAATATCTCAATGCCTGTACCAACTACATTAACTAGAGAGCAAGCAACTACTGGTTACATACCTACAAGCGCTACTTTCAATACCACAGTGCGTATTTCTACTGAAGAGGCAACTCCTGAACGCTCAACAGCTAACCAAGCCACTACTGCTTACTTACCTGAAACAACTGTACCTGTTGGAAACACTCCCTCAACACCAGTACCAACTGCGTTCAATACCACAGTGCATGTTTCTACTGAACAcctgacctctgacccactgactactGTTCCTGTTCAAAACAGTCCCCCAACGTCTATACCAACTACATTCAATAGAACAGTTTCAACTGAACAGTTAACTACTGAACACCTAAATACAGAAAGTGCACCTACTGTACCTTTTCAAAGCATTATCTCATCGTCTGTACCAACTACCACAGTACATGCTTCAACTGAAATGTTAACTACTGAACACTCAACTACAGAGAAAGTGACTACTGATTTCTCACCTACAAGAGCTTCTAATGCTAATGTCCAAAACATTTCCTCCACGTCTTTACCAAGTACATTCAATACCACTGTGCATGTTTCAACTGAAGAGGCGACTACTAAACACCTTACTACTGAGAATGTAAAACATCAATCAACAACTGAGACTGCAGACACAGAAATGCAACACAGCATTACACAAGTGACTACTGAACATACTTCTGCCCTACATATAACCACAGTGGCTGAGACTGCCCCATACAGTACTACAGGGCCTGTCAGTCTCTCCACTGTTATGCCAAATGAAAACAGTCAAGGTTTAAGTCCAGACAACCTGATATTGATCCATGAGAACATGACGTGGAACGAGGCCCTGAGCTACTGCAGAGAGCACCACGTTGACCTGGTCTCGATCACTACAGAGCTGCTTCAGTACTGGGTGACAGAGAGGGCTGCCGACGCCACCTCATCCCACGTCTGGGTGGGCCTGCGCTTCACCTGTTCATTCCACTTCTGGTTCTGGATCAGGTCTGATGCAGGCTGCTACCAGAACTGGGCCCCCGGGCACGGCTCAGACAGCCAGCAGGACTGTGGGATTGCAGGGGCTGTACAGACCACCGGGAGGCAGCAATGGGTTAGTCTGGAGGAGAACCAGAGGCTCAACTTCATCTGCTACAAATGTTCTGGGGACAGTGGTGAGGGGTTGATACATCCCTGATTCGGACAACTTTTGTATTATGTATGTTTCTTGTGCAACGTGaaaaatgtacactaccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcacattttatgtccataaaataacatcaagttgATCAGGAACatagtgtagatattgttaatgttgtaaatgactattgtagctggaaatggcagattttttatgtaatatctacataggcgtacagaggcccatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246571 lncRNA upstream 14704 2777367 ~ 2856715 (+) True G216478
TU246712 lncRNA upstream 27744 2840038 ~ 2843675 (+) True G216598
TU246704 lncRNA upstream 51390 2819626 ~ 2820029 (+) True G216591
TU246683 lncRNA upstream 95740 2772480 ~ 2775679 (+) True G216571
TU246673 lncRNA upstream 125253 2745814 ~ 2746166 (+) True G216564
TU246572 lncRNA downstream 5455 2889057 ~ 2901408 (+) False G216479
TU246574 lncRNA downstream 5455 2889057 ~ 2901408 (+) False G216479
TU246575 lncRNA downstream 5455 2889057 ~ 2901408 (+) True G216479
TU246721 lncRNA downstream 23482 2907084 ~ 2981672 (+) True G216602
TU246731 lncRNA downstream 76579 2960181 ~ 2961034 (+) True G216609
XM_036965704.1 mRNA upstream 18080 2606023 ~ 2853339 (+) False fhod3b
XM_036965706.1 mRNA upstream 18080 2606620 ~ 2853339 (+) False fhod3b
XM_036965707.1 mRNA upstream 18080 2805332 ~ 2853339 (+) True fhod3b
XR_005039814.1 mRNA upstream 452287 2414471 ~ 2419132 (+) True LOC118944474
XM_036965657.1 mRNA upstream 587105 2258551 ~ 2284314 (+) True abcb5
XM_036965726.1 mRNA downstream 40839 2924441 ~ 2943873 (+) False LOC110520727
XM_036965729.1 mRNA downstream 40839 2924441 ~ 2943873 (+) False LOC110520727
XM_036965736.1 mRNA downstream 40839 2924441 ~ 2943873 (+) True LOC110520727
XM_036965749.1 mRNA downstream 66763 2950365 ~ 2963921 (+) True LOC110520728
XM_021586489.2 mRNA downstream 105304 2988906 ~ 2992685 (+) False LOC110506689
TU246526 other upstream 296520 2572395 ~ 2574899 (+) False G216438
TU246414 other upstream 408675 2461217 ~ 2462744 (+) True G216353
TU245815 other upstream 885623 1984983 ~ 1985796 (+) True ahr1a
TU245816 other upstream 905367 1960868 ~ 1966052 (+) False ahr1a
TU245773 other upstream 1066164 1804388 ~ 1805255 (+) True G215843
TU246778 other downstream 133562 3017164 ~ 3019834 (+) False LOC110506718
TU246775 other downstream 156384 3039986 ~ 3041517 (+) True G216640
TU246830 other downstream 222752 3106354 ~ 3108233 (+) False G216673
TU246814 other downstream 223009 3106611 ~ 3108233 (+) False G216673
TU247395 other downstream 596714 3480316 ~ 3481536 (+) True G217146

Expression Profile