RNA id: XM_036963128.1


Basic Information

Item Value
RNA id XM_036963128.1
length 5379
RNA type mRNA
GC content 0.48
exon number 42
gene id c4b
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2889071 ~ 2916355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAATAAAACTGTGAAGATAGGGTCTGTGGACAGGGCAGGAGGAGAGACAGTGAACAAGAACCATGGGCTCTCCCGTCTGTCTTATGGTGCTCTTCATTTTGGCTGCTGAGTCTGTACATGGACAGGACAGGTTCTTTATCTCAGCTCCCAATGTGTTCCATGTGGGGGTGAAGGAGCGTGTCTATGTCCAGCTGGGTAAAGCCCTCCTGAATAAACGTGTTACCCTTTACCTGGAGCATGAGGAAACTACACATCTGATGTCTCAAAAGAGCAGCACTGTGTGTACTGAGGAGGGACAGATCCAAACTGTGGAACTAGAGGTAGAAAGGGACAAGCTGCCCACCTTTGGGGATATTCCCTATCTTCTGCTGGTGGCTGAGATGGATGGGGTGACAGGCAGAAAGATGGTGAGGGTCCTAGTCTCCCAACACAGAGGCTACATCTTCATTCAGACTGACCAGCCTATCTACAACCCTACACAGCAAGtgaGATACAGGATATTTACCCTCAACCACTCAATGAAGCCCCATGATGACGTTTTTCAGATCTCTATTTTTAATGCTGCGGGCAACCGGATAATGAAGACTCTTAAGAGAGCTACGGATGGAATATTCACCAATATCCCTTTTAATATCCCTGATGTCTCAGAaATGGGTGTCTGGAGGATCGTGGCTCATTACCAAGGAGATGAAAAGAATGCTGTTACTCGAGAATTTCAAGTCAAGAAATTTGTGCTGCCGAGCTTTGAGGTGACCGTCATACCTAAGCAAAGCTACTTTCTATTGAACACTGAACAGTTCACCTTCACAATTTTAGCCAAGTACTCCTATGGTGAGAGTATAAAGGGAGCTTTCCACTGCCGGTTTGGACTGAAGGAGAAAACACAGGGGCCAGATGGTGAAAAAGACAAGATTGTCTTCATCAGAGGATTGGAGCTGACTGGATCGATAAAAGATGGAGAGGGGTCGGCGGTTCTCCAGGAATCCAAGCTCCGAGAGCAACTCAAATCCAACCTCAACACCACCCTCTCAGACGTGGTCCAGAGCAAAGCACAGCTTTACATGGCCGTGTCTGTCACTGACATCATCAGTGGTGAGCTACAGGAAGCAGAGGTGTCTCTTCCTGTTGTTTCCCAGCGTTACACCGTAGACCTGTCCCGTACCCGCTCTCACTACATCCCTGGAGTTCCTCTCAGTGTAGTGGTGGTGGTCCGTCTCCCAAATGGTTCCCCAGCTGTTGGAGAGCCAGTGAGAATGCATCTGCCAGAACTCCAGGATGGAGACCAAACTGTAAAGACTAACCAGCAGGGCGCAGTGTGGCACgattttaaccttcccaatcttGATCGTGACATTACTGTGGAGGTGACTGTAGATCACCAGAAAATAACCAAAGACGTCAATCGTACATCGTCTCCTGGCAACACCTATCTGAGCGTGAGCGTGAGCCAAACGTTTCTGACGCTGGGTCAAACCCTTTCCGTTGTATTCAAAGTCTTCAATGGGCCACCAGAGGATGGGTTTATTTACTACATGGTTTTCAGCCGTGGAGTGCTAACAAAACAGGGTTCTGTCAAATCAGGGGACTTAACAAAGGTTCAGCTTCCAATCACGCCTGATATGACCCCCTCCTTCCGTCTGATTGGCTACTACTATGATCAGAAAGGTGACATCATTACTGACTCTGTGTGGGTAGACGTCGACGATGCTTGTGAGGGGACAGTGAAGGTAAAGTCAAAAGATGAATATCTACCTGGAAACACGGCGAAGCTGGAGATAGACTTAAATGGTCAGAAGGCCAAAGTTGCCTTGCTGGCTGTGGACAAGGCTATTTATGCTCTCAATGCCCAGAACAAACTCACCCCCAAACAGGTATTCTCGTCCATGCAGTCCTATGACCTTGGTTGCTCATACGGTGGCGGCTCAGATACAGCCTCTGTGTTGAACGACGCTGGCTTGTCATTCATCTCCAACTCTCATGTGCTATCTAGGATGAGGAAGGGGTTTAACTGTGAGTCAGGCTTCAGACGACAGAGGCGTTCCCTGGACCTCCAGGAGCAGATGGTGTCCATAAAATCCAGTTACTCAGACGCCAAGCTGCAGGAGTGTTGTTCTCATGGCTTGTCCCTGATCCCCATGCTGAGGACGTGTCAGCAGAGAGCCGAGAGAGTGGCACGAGCCAATAAGGACCGTGTCTGTGTCAAGGCCTTCCTGGACTGCTGCATAGAGGGAGAGAAGTTGAGGGAGAAGAAGAAACGAGACGACGCCCAGAGAGGACATGGCAGGActgcGAGTGCCACAGACATCGAAGACTTCTTTGACACAACCAATCAGCAAATACGCAGAAGTTTCCCCCCAAGCTTTGCATTCGCAGTGGTCGATATAAACGGCAAAGGAAGTCATACTGTGGCTCTGCCTGATTCCATCACCACCTGGGAGATACAGGCTGTCAGCTTGTCTGCTTCTCATGGCATCTGTGTGGCAGAACCACATGAGTTCCGTGTGTTTAAGAAGGTTTTTGTCTCTCTGAGGCTGCCGTACTCAGTCAAAAGATTTGAGCAAATGTCTATTGCTCCTGTTGTCTACAACTATTGTGACGAGGCTGCACAGATTGCACTCCACATGGAGAGAAATGACAAGCTCTGTTCACCAGGCTCCAGTTCCATCAAAACCTATGTCAACATCACCGTGGAGGCCCACTCCTCCAAAGCAGTCACATTCTCTGCAGTACCCATGGAAACCGGCCCCATACCCATCAAAATACGCCTTTATGACATAGAGAATGAGGACGGCAGTGATGCTATTGAAAAGATTCTGAATGTTAGAACGGAGGGAATAGAGAAGAGAGTGGAGGAAACTCATTTTGTTGACCTGAATGCCAATATTGGGAAGAGTCGCCAATCTTTCACGTTTGATGGAAAGTTACCAGACAACACAGTCCCTGGCTCCAGCACCAATATCTTCGTCAAGATGGAAGGGGAGCTGTTTGGCAAGTCCACTTCCAAGACCCTGCTCTCTCCCGATGGGGTTAGCAGCTTGCTCAATGCTCCTCATGGATGTGCAGAGCAGACTATGAAACGTATGGCCCCCACAGCCCTGGCCCTCCGCTATCTGGACCTTAGCCAGCGCTGGTATGAGCTGCCCCCTGGCATCAGAGATACAGCTCTCCAGTTCACAGAGCAAGgctaTATGAGAATTTTGACTTTTAAAAAGGGTGATGGATCGTATGGAGCTTGGACGCACCATCCCACCAGTTACTGGCTGACGGGCCTTGTTGTGAAAGTGATGTCTCTGGTGGCAGAACGTCAGAATGCAGGCggtggagagaaggggagatgggCACAGGGTGTGTCTGAGCAGCATATCATTGATTCAGTCAGATACCTCCTGGTTAAACAGAAGGAGGATGGATCATTCTCGGACCCTAACCCAGTCATACACCGGGAAATGCAGgGAGGcattggagggatagagggagatgtCGCCATGACTGCTTTCATAACTGTGGCTCTAAATCGCTCCCTCCCTTTCCTGACAGACAACAAGGAGCGTAGCGATACGaaAGCCAATATCTCCAAAGCCACCGACTACCTGCTCTCACATGTTGAGGGGCTACAGAGGCCCTACGCTGTGGCCATAACAGcctactgtctgtcagtctgtctgactGACCGGAAACAGGCTGAGCCTGCCTGGGAAAAACTCAAAGGACTGGCAACTGAAGGGAAAGACAATTGCCGTGGGTGGTATGCTAACGCTGGCATGGTGAATGAGGAAAAGAAACATTATGTACCGACAACAGAGGCCATAACAGTAGAGACTACAGCCTATGCCCTGTTAACTGCAGTGGCTCATAAGGACGCAGAGTGGGCAGACTCTGCAGCCTGCTGGCTGACTTCACAGGAGAACTATGGAGGAGGTTTCAAGTCCACACAGGATACTATAGTGGCTTTGGAGGCTCTCTCTGAGTATGCACTGAACAGGCCCCAACCTCCCATCACAGAAGTGGAGGTACAGTTCACTATTCCAGGGAAGAGCGACATTCAGAAGCTGTCATTGGACAACAAGGGGGATAAAGTAGAAACGGAGCTGAAGAGACTGATTGGTAATCCTATCATTGACGTAGCCCTAACGGGACAGGGAAAAGCCAAGATGAAGGTTACGAAAGCTTACCATCTACTGGACACTGCAGACGACTGTAACCTTCTGTCAATCACAGTCAAAgtagaggggagagtagagtacaCTGcccagattGTTGAAGACTACAACGACTATGAGGGTGACTATGGAGacggagagaaaagggaggaagaggatgtcCCCCGATCAGCGATTGAGTGGTTTGACGCTCGCAGCAGACACAGAAGAGATACTCAGCAAAGCCGGAATTCTGAAAACGATGTTGAATACGAAGTCTGTGTGAGTCATAGTCTGACCAGGAATCTCACAGGAATGTCCATAGCCGACATCACACTGCTCAGTGGCTTTGAGGCACAGACAGACGACCTGGACAAGCTAAAGAACCCTGATGAACAATACATCTCTCACTACGAGGTCTCACATGGCAAAGTGCTGTTGTACTTTAATGAGatTGAGGAAAGGGAGTGTGTAACGTTTAGGGCTGTGCAGACAGTAACTATAGGTTTACTGCAGCCTGCTCCGGCCACATTCTATGACTACTATGAACCAGaCAGAAAGTGTACTACTTTCTATGCTGCACCAAAAAGAAGCAAGATGGTTTCAACATTGTGTTCAGGGGATGTGTGCCAGTGTTCAGAGAGGCCCTGCCACAAAGAGAAGGACACTTTTGGACCACTGAAGCTAGAGAAGAAAGATCGTTTTGAACATGCTTGCTATTCCCCCACTGTGGATTACGGTTTCATTGTCCAAGTCATCAGTATGTCTGTGAAGAGTAACTTTGAACTCTACACAACTAATGTGGCGAAGGTACTCCGAGCCACCGGAGATGTGAAGCTGGAGGAGAGCAAAGTGCGAGTGTTCGCCAAGAGGCTCCAGTGTAAAGGACAGCTAGAGACAGGGAAGACATACCTCATCATGGGCAAAGATGGCTCCACCACCGACTCGAATGGCCAGATGCAATACCTTTTGGAATCAAATACCTGGATTGAACAAGTGCCCAATGAGAAAAAGTGCCAAGGATCAAAGAACAGGCCTACATGCAAAAAATTTAAAGACTTTGTATCTGAGTACATGTTGAATGGCTGCACCCAGTAACTGGTTCACTGACATGTTAACATGCGTACTCAACACATCATCTAGAAAATTAAATGTTTTTATCGAGTCATGTAATTTAGTGTTTGTAACATCCACTTTCAATACTTATCAAGATCAATAAAATGGCATTTTAACCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247057 lncRNA downstream 2637 2875190 ~ 2886434 (-) False G216868
TU247062 lncRNA downstream 9282 2875643 ~ 2879789 (-) True G216868
TU247046 lncRNA downstream 35734 2849231 ~ 2853337 (-) False G216859
TU247047 lncRNA downstream 37825 2849231 ~ 2851246 (-) True G216859
TU247022 lncRNA downstream 75402 2809997 ~ 2813669 (-) True G216837
TU247070 lncRNA upstream 2424 2918779 ~ 2921114 (-) True G216874
TU247077 lncRNA upstream 12744 2929099 ~ 2931363 (-) True G216877
TU247102 lncRNA upstream 42201 2958556 ~ 2959009 (-) True G216892
TU247104 lncRNA upstream 43690 2960045 ~ 2960829 (-) True G216893
TU247144 lncRNA upstream 81455 2997810 ~ 3004711 (-) True G216920
XM_036965710.1 mRNA downstream 19977 2856098 ~ 2869094 (-) False LOC110517891
XM_036965714.1 mRNA downstream 19977 2856098 ~ 2869094 (-) True LOC110517891
XM_036965697.1 mRNA downstream 284305 2583240 ~ 2604766 (-) True LOC110520772
XM_036965694.1 mRNA downstream 307631 2567040 ~ 2581440 (-) True LOC110519055
XM_036975424.1 mRNA downstream 335699 2546234 ~ 2553372 (-) True LOC118964348
XM_036975425.1 mRNA upstream 47291 2963646 ~ 2988272 (-) True LOC118964349
XM_036965779.1 mRNA upstream 75869 2992224 ~ 2997421 (-) False LOC110520729
XM_036965771.1 mRNA upstream 75869 2992224 ~ 2997423 (-) False LOC110520729
XM_036965775.1 mRNA upstream 75869 2992224 ~ 2997425 (-) True LOC110520729
XM_036965793.1 mRNA upstream 106453 3022808 ~ 3058765 (-) False LOC110506699
TU246996 other downstream 150604 2736861 ~ 2738467 (-) True G216811
TU246045 other downstream 763719 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 767214 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 830642 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 936483 1926744 ~ 1952588 (-) True LOC110516567
TU247125 other upstream 129650 3046005 ~ 3059744 (-) True G216902
TU247540 other upstream 421831 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 770047 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 1522741 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 1522741 4439096 ~ 4440437 (-) True G218073

Expression Profile