RNA id: XM_036975425.1


Basic Information

Item Value
RNA id XM_036975425.1
length 2160
RNA type mRNA
GC content 0.52
exon number 22
gene id LOC118964349
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2963646 ~ 2988272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAAGGAACCAGTAAAAGGGCGGAAGAGAAGGGCTATGCCGCTCCCTATGATCCATTCTTCAGTGGACCAGTACGAAAGAGGAGCTGCACAGATCTGATCTGCTGCATACTGTTCTTGGCTGTCATAGCTGGTTACATGGTCATGGGAGTTCTGGccTGGTTGTTTGGAGACCCTCGCCATGTTCTCTTCCCCAGGAACTCCACCGGAATGTTCTGTGGCGTGGGGATGAATAGAGACCAGCCCAGGATGATCTATGTGGACATACTGAAGTGTGCCACGACCACCAAGGTGATGGCAGCAGCGCTCGGAGGCACACAGTGTCCCACCACACAGGTGTGTGTCCCTAAGTGTCCGTCTCACTTCTGGATGCTGTCTGCTGCTGCCTATGACCCCGACGCCAATCCCAAAGACTTCTTCCATCAGCAGTACTGTGACCACAGCCTCAACCTGACTACCACCACCTGGACTGTCCAAGAGATCCTTGATGCAGAACTTTGTCCGTCCTTCCTTGTTCCAAGTAAATCAGCTCTGGGGAGGTGTTTGCCCAGTCTACATGCTCTCAAAAGTGCTCCTTCCAACTTCACTCTGCCCGGAATGGCCTCCGTCAACGAGACAGTCAACAGCATCAGAAGCGCCATGGGCTCACTGATATCAGGCTTCAACAGAAAGGCCGTAGGAGTGAGGGTCTTTGAGGACTTTGCCTCCTCCTGGTACTGGATCTTACTTGGTCTGACGCTGGCTCTGCTAGTCAGTGTGGTGTTCCTGTTGCTGCTGAGGTACCTGGCCATTGTCCTGGTCTGGATTCTCATGGTGGGACTTCTGGTGGTGGGAGGCTACGGAATATGGCACTGCTACTCAGAATACTACCATTTCAGCACTTCTAAACTGAAGTTCGGTGATCTAAGCTTCAATACAAATATCTCAGTCTACCTTCAAGTCAAAGAGACCTGGCTTGCTTTCTTGATCATCCTGTGCGTGTGGGAGTCCATTTTGATTCTGGTGCTTAGTTGTCTCAGGAGGAGACTCTCTGTTGCTGTTGCTCTCATGGAGGAGTCCAGCAGGGTGGTGGGTTACCTGATGTCCACCCTGCTCTACCCTCTGTTTACCTTTGTTCTGCTGGTGGTGTGTGTGGCCTACTGGGGAATGACCTCCCTATACTTGGTCACATCAGGGGCCCCTCTCTACAGAGTGGTGTCTCTTAGCGACCCCTCTGTAGATAAGTGTAGTCTCATCAACGGCTCTGAGACCTGCAAGCCACAGACGTTCAACTCCTCGGCCTACCCATACTGCCCGTCGGTGCGCTGCATCTTCTTCAGGTACGATGACACAGGCCTGTTCCAGCAGAACCTGGTTTACCTGCAGGTCTTCAACATCTTTGCCTTCCTGTGGTGTGTGAACTTTGTCATCGCCCTGGGCCAATGTACCCTGGCTGGGACCTTTGCTTCATACTACTGGGCCTTCAGCAAGCCTGCAGAAATCTCACCCTTCGCCCTGTCCCAGTGCTTCATACGCACTCTACAGTACCACGTGGGCTCTCTGGCATTTGGAGCCCTCCTCCTCACCTGCTTCCAGCTAGTCAGGTTGGTGCTGGAGTACCTGAACCATAAGACCAGGGGTTCTCAGAGTGCCTGTGGTCGGTTCCTGTTTAACTGTCTCAGATGCTGCTTCTGGTGTCTGGAATACTTCCTGAAGATCCTCAACAGGAACGCTTATATCATGATCGCCATCTACGGGGAGAGCTTCTGTGTGTCAGCCAAAAATGCATACAGTCTGTTGATGAGGCACATTGGACGGGTGGTGCTActggacagagtgacagacatgCTCATATTCTTTGGCAAACTACTAGTGGTGGCAATAGTTGGTGTGTTggctttcttcttcttctctggacAAATCCGCCTGCCTGGCGACACGTTCCAGGCCGAGATGCTCAACTATTACTGGGTTCCCATCCTGACAGTGATGGCCGGAGCCTACCTCATCGCTCAGGGCTTCTTCAGTGTCTACAGCATGTGTGTTGACACCCTGTTTCTCTGCTTCTTGGAAGATCTAGAGAGGAATGATGGAACTATGCAGAAGCCTTATTACATGTCCAGGAACCTGATGAGGATCCTCCGCAAACCCAAACCGTTTGTTACAGCGCTGCCAGAGTAG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247104 lncRNA downstream 2817 2960045 ~ 2960829 (-) True G216893
TU247102 lncRNA downstream 4637 2958556 ~ 2959009 (-) True G216892
TU247077 lncRNA downstream 32283 2929099 ~ 2931363 (-) True G216877
TU247070 lncRNA downstream 42532 2918779 ~ 2921114 (-) True G216874
TU247057 lncRNA downstream 77212 2875190 ~ 2886434 (-) False G216868
TU247144 lncRNA upstream 9538 2997810 ~ 3004711 (-) True G216920
TU247152 lncRNA upstream 23490 3011762 ~ 3012035 (-) True G216925
TU247135 lncRNA upstream 31973 3020245 ~ 3021397 (-) True G216911
TU247161 lncRNA upstream 76881 3065153 ~ 3065479 (-) True G216934
TU247165 lncRNA upstream 85726 3073998 ~ 3074430 (-) True G216938
XM_036963128.1 mRNA downstream 47291 2889071 ~ 2916355 (-) False c4b
XM_036963137.1 mRNA downstream 47291 2889071 ~ 2916355 (-) True c4b
NM_001124385.1 mRNA downstream 47308 2889071 ~ 2916338 (-) False c4b
XM_036965710.1 mRNA downstream 94552 2856098 ~ 2869094 (-) False LOC110517891
XM_036965714.1 mRNA downstream 94552 2856098 ~ 2869094 (-) True LOC110517891
XM_036965779.1 mRNA upstream 3952 2992224 ~ 2997421 (-) False LOC110520729
XM_036965771.1 mRNA upstream 3952 2992224 ~ 2997423 (-) False LOC110520729
XM_036965775.1 mRNA upstream 3952 2992224 ~ 2997425 (-) True LOC110520729
XM_036965793.1 mRNA upstream 34536 3022808 ~ 3058765 (-) False LOC110506699
XM_036965795.1 mRNA upstream 34536 3022808 ~ 3058765 (-) False LOC110506699
TU246996 other downstream 225179 2736861 ~ 2738467 (-) True G216811
TU246045 other downstream 838294 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 841789 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 905217 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 1011058 1926744 ~ 1952588 (-) True LOC110516567
TU247125 other upstream 57733 3046005 ~ 3059744 (-) True G216902
TU247540 other upstream 349914 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 698130 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 1450824 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 1450824 4439096 ~ 4440437 (-) True G218073

Expression Profile