RNA id: XM_036965779.1


Basic Information

Item Value
RNA id XM_036965779.1
length 1985
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110520729
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2992224 ~ 2997425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaccactaggctaccgtaTAGATTTAGGTACAAGGAAGGAATGCATATAATTatttttacttaactaggcaagtcagttaagaacaaattcctatttacaatgacggcctacctcggccaaTTGTGtgcagccggatgtgatgcagcctggatttgagccagatactgcagtgatgcctcttgcactgtcttagaccactgcgccactcgggatgtAACATGTAACAGTACGGTTAGGCTAAGTATTGTAGAACTAATTGGATAAATGTGAAAATtacagggctcctgagtggcgcagggtctaaggcattgcatctcagtgaatgaggcgtcactacagtccctggttcgaatccaggttgtatcacatctGGCAGTGATTGtgagtccgtcattgtaaataagaatttgttcttaactggcttgtctgtttaaatatatgtatattattttaAGCAAATAACTTGTTCTCAGTCCTTGACACTAGATGGCACTGTTAAGCATATCATCTTCAAAACAACATTCTTTTTATGTGAGAAGTCAATAAATGTTTCCCCGCAAATGTGTATTCATGACCCATATAGAAACTAGGCCTTGGAGAACTGAGATTGGACTCTGAGATGAGAGACTAACTTGATAAGGAACTTCACACTCTCACATGGATAATGGCACTGTTTCAGTCACACGGGTTATCAATACTTCTGTTGATCATCAGAACACAGTTTGCTGGTGCTGAGTCTTGTTCTCATGTAGATGCGCCACAATTCATCACAGCTACTCAGGAAGAGGTagctgtcctcccctgtttcacATCAATCCACAAAGCAACCAGAGTGAAATGGACAAAACTTTCACCTAAACCTGAGGACATCTTGGTGTGGCCTGATAATCCATCTGTGGCCCATAAATCAGAACGTGTGGCTTTCGAGTCGGGAGCGGATGTTGTGGTGGCTGGAAACCTGTCCCTGTCTCTAAGAGATGTAAGGAAATCTGACGAAGGGCTTTATAGTTGCAATGTCTGGTTGGGATGGAGTTGTGTTCATGTGAAAAACATCACTCTAAAAGTGAAAGATATCTCCAACCAAACATTCCTAGGAAAAAGGGTGAGCTTTGGAGGGAATCTCAGTTCAGGAGATGCATCTTTGGCTCTCTCCATGGTGGAGTACAGTCACAGCCAATGGTACAGATGTAGGTTGCAGATGGGACAAAATGAACGCTGCTTTGAGGTCAAGCTGCAGGTTAAAGAACAGGAGGAGAACCTGGTTGTTCGGACTTTCACCACAACTGAGCTAACAGACCCTGCAGTTACCTCCAGGGGGAGTCCAGAAAGAGTTGCGACGGCTACAGTTGGAACGGCTACTATAGTGGCTTCATCCATGTGTGTGATTGTCATAATGGCTCTTACGCTGGGATTGATCATTTGCCTCAGGCGCCGCAGACACTCAGatggAGATGAGTCTGACTGGAATGCTTATGAAGATGTACAAGACCCAGCAACGGGACCCAATTGTCTGTATTCACTTGCAGATTTTGACCAGAAGGACAACCTACACACTTttcaATGCCAGTGAAAAGAATAATCATCTTTCAATCAACACACCATGTCTTACCGAACCCTTCACAAAACATCTGTAAATGCTTTTTTATGATATTCACCCACTTATCTTTCAACCCCTGGTATAGCCTCCATAGTATTACACAATAACACTCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACAATCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACAATCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACAATCTTATCTTTCAACccctggtatagcctacatagtaTTACACAATAACACTCTTATCTTTCAACCCCTGGTATAGCCTCCATAGTATTACACAATAACAATCTTATCTTTCAACCCCTGGTATAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247067 lncRNA downstream 10441 2907312 ~ 2981783 (-) True G216871
TU247104 lncRNA downstream 31395 2960045 ~ 2960829 (-) True G216893
TU247102 lncRNA downstream 33215 2958556 ~ 2959009 (-) True G216892
TU247077 lncRNA downstream 60861 2929099 ~ 2931363 (-) True G216877
TU247070 lncRNA downstream 71110 2918779 ~ 2921114 (-) True G216874
TU247144 lncRNA upstream 389 2997810 ~ 3004711 (-) True G216920
TU247152 lncRNA upstream 14341 3011762 ~ 3012035 (-) True G216925
TU247135 lncRNA upstream 22824 3020245 ~ 3021397 (-) True G216911
TU247161 lncRNA upstream 67732 3065153 ~ 3065479 (-) True G216934
TU247165 lncRNA upstream 76577 3073998 ~ 3074430 (-) True G216938
XM_036975425.1 mRNA downstream 3952 2963646 ~ 2988272 (-) True LOC118964349
XM_036963128.1 mRNA downstream 75869 2889071 ~ 2916355 (-) False c4b
XM_036963137.1 mRNA downstream 75869 2889071 ~ 2916355 (-) True c4b
NM_001124385.1 mRNA downstream 75886 2889071 ~ 2916338 (-) False c4b
XM_036965710.1 mRNA downstream 123130 2856098 ~ 2869094 (-) False LOC110517891
XM_036965793.1 mRNA upstream 25387 3022808 ~ 3058765 (-) False LOC110506699
XM_036965795.1 mRNA upstream 25387 3022808 ~ 3058765 (-) False LOC110506699
XM_036965802.1 mRNA upstream 25387 3022808 ~ 3058765 (-) False LOC110506699
XM_036965808.1 mRNA upstream 25387 3022808 ~ 3058765 (-) False LOC110506699
XM_036965811.1 mRNA upstream 25387 3022808 ~ 3058765 (-) False LOC110506699
TU246996 other downstream 253757 2736861 ~ 2738467 (-) True G216811
TU246045 other downstream 866872 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 870367 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 933795 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 1039636 1926744 ~ 1952588 (-) True LOC110516567
TU247125 other upstream 48584 3046005 ~ 3059744 (-) True G216902
TU247540 other upstream 340765 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 688981 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 1441675 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 1441675 4439096 ~ 4440437 (-) True G218073

Expression Profile