RNA id: XM_036965811.1


Basic Information

Item Value
RNA id XM_036965811.1
length 8902
RNA type mRNA
GC content 0.50
exon number 30
gene id LOC110506699
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3022808 ~ 3058765 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaagaggagaagaagaagaaagacgAAGAGGAGTCAGcaaagaaagaggagaagaagaaaggggaggaaaagacaacaaaaaaaacgcAAAAGGggaagaagaaagagaaagaaaataaagaggaggagaaggggaagaagAACGAGGCGAATAAAGAGGTAAAGAAGAACGAGGAGAATAAAGAGTTAAAGAAGAAAAAACGGAAGGGCAAAAAGAAAGCAGGGGAGGAGCACAAAGCAGGGGAGCAGTCCACAACAGAGGTGCAGGTGAAAGCCCCCATCGCGGCCCCGGAGCCAGAGCTCAGAGCAGAGGCGGAGGGGGAGGCTGAacaggagaggcaggaggagccGGTAGAGGACCAGGACCATCACTCCATCAGCAGTGCAGAGACACAGCCAGCACAGGCGGAGCAGAAGGTGAACGCCgaggtagagaaggaggtggtagagggggaagagaaggaggcgggagtagaggagaaagagaagaaagaagaAACAGAGGAAGAGCCAGCCGagcagatggaggaggaggagggagaggcgaACGGAGGGGAAGGGGAGAACACTAATGGAGAAGACAAGATGGCTTTAGCAGAGGAGGCCAAACCCTCCAAGCGTCCGCGGATCATGCAGTGTAAAGTCACCCTCCTGGACGACACTCTGTTTGAGTGTGAGCTCGGTAAACATGCGACGggctcagatctgtttgtgaagGTGTGTGACCACCTCAACCTGCTGGAGAGAGACTACTGTGGCCTGGCCGTCTGGGATACCCCCACCTCCAGGACATGGCTGGACGCCTCCAAAGAGATCCGGAAACAGGTGGCAGATTATACATACGAGTTCACTTTCAACGTGAAGTTCTACCCTCCTGATCCAGCTCAGCTCACAGAAGACCTCACCAGGTACTACCTGTGTCTACAGCTGCGTAAAGACATCCTGAGTGGCCTGCTGCCATGCTCCTTTGTAACTCTGGCCATGCTAGGCTCCTACACGGCCCAGTCTGAGCTGGGGGAGTATGATCCAGAGGTCCACGGCTCTCACTACACCAAGGAGCTGAGGCTGGCCCCGGGACAGGGCAAAGAGCTGGAGGACAAGGTCATGGAGTTGCACCGCACATACAGATCCATGAGTCCAGCCCAGGCAGACATGTTGTTTCTGGAGAATGCCAAGAAGCTGTCTATGTATGGAGTGGATCTGCACCAAGCCAAGGATCTTGAGGGTGTGGACATCACTCTAGGGGTGTGTTCTGGTGGTCTCATGGTATATAAGGACAAGCTGAGGATCAATCGTTTCCCCTGGCCCAAAGTCCTCAAGATCTCCTACAAGCGAAGCAGCTTCTTCATCAAGGTCCGTCCCTCTGAACAAGAACAGTATGAGAGCACAATCGGCTTCAAGCTGCCCAACTACAAGGCCTCCAAGAAGCTGTGGAAGGCCTCAGTGGAACACCATACCTTCTTCAGGGTGTCGTCCGTGGAGCCCCCGTCGTCCCGCTCCCGGTTCCTGGCGCTGGGGTCAAAGTTCAGGTACAGTGGCCGTACCCAGGCCCAGACCCGCCAGGCCAGTTCCATGATCGCCCGGCCCGCCCCTCGCTTCACACGGTCCGCCAGCAAGAGGCTGTCCCGCACCATCGCCgaagCTGGAGATGATGATCTCCAAGCCTCGCAGCTCTCTGCTAGTCCAAACAAGACCGAGGATGACGATTGGTTCTTCATGCTGGGATCTGACCAACCCCAGACTTTCTTTTCACCAGccagagggagggagacttTCTCTGTGGAGACTTCTACTCAGAGCTGGGATGATGGCAAGTCTgtccagacagtcagacaggcatGGCAGGAGACTGAGACAGGCCAGACGGTCAGTCGGACTGTCAGTCAGACATGGCAGGGACGAGTGTCTGATGAACAGCAGCaggggagactggaggaggagaaagaggaggattgGTCTGTCCTGCTGGGCAGACGACTCTCCCTTCCCTATGTCCCCTACCCCATGATGAAACCGCCAGTCAAATACCGCTCTGCCCAGGTGGCAAAGGTGGCCACGGCCAAAATTCTGGAGAGGCTGCTACAGCCAAGGCAGGAACAAAGTGATGACTGGGTCATGCAGTTGGACCGCAGCTTTGAGTTTGCAGACACACCTCCATGCTACACTCCTGTTCTTCCTCTACTGATAACCCCAATCTGCCCCTcctcagtctctcccccagtctccctggagaaggaggagactaggcaggagaggagggaggtgatcAAGAGGCTCCAGGAAGGGGTGTTCCTGGTGGAGAAGCTGAGGGAGGTAGAGGTGCTGGATGAGAGACTGAGGGAGGTGAAGGTTTTGGAAGAACGGCTGCAGGAGGTGgatgagctggaggagaggatacaggaggaggtggaagccaggcaggaggaggagggaggggtagaacaagaggagggggaggtagaggaggaggtggtagaggcaGCGGAAGAGAATGTGGAGGAAGTAGATGAGTTGGAGGAGCAGATAAAGGAGGTGTTTCTCAAAGGATTGCTGCCAGATGAGTCAGGGGAAGATGAGGGACTAAAAGAGGAGAGTATGGAAGAGGCAGAGGAATCTGAAAAAGGGTGGTCAAATGTGGCAAGCACCTCCTCTGTGGTACGGAGAGTAGATTTGAGGACCCAGAATAGTGTGACTATAGTGAAAGAGATGAGGCAAcaagaaggagggatggaggaggagacgCTGGAACAGGTGGCGGTTTCAGACGAGGGATTGAAAGAGGATGAAGgatggttagaggagaggaagcaTCAGGCTTTGGTGGAAGGGTTGCCAGAGGGGcttgaggaaaggagaggagagataagagtggaaaggaggaggaagaaggtgaCTATAGTGACACAGGATGAGAGTCTTCCAGATGAACTAGAGAAGAAAGCATCTGAGAAGTTGTCAGAGGACCAGATAGGAGGCCATTTTTATAAAGAGGGACAACTTATGGTGAAATTCAATGAACTATTTGCGGCAGAGAAGTTAGGGTTACCGATAGTTACAATTCAGCAGGAGTGGCTCCAAGAACAGGAAAAGGTCAgggaggagaaacaggaggagagagtggaacAGGTGAAGATTTCAGCCGAGGGATTGATAGAGGTGAAAGGAGGTCTAGAGGATAGGATGCGGCAGATGTCGGAGGAAAGGTTGCGAGAGGGAGAGCAGACTGTGGTGAAAACCAAGAAAACAGTGAGAATAGTGGAAGAAATGAGGAGAACACAGAAGACACTCGAGGAAAAGTCATCAGAGGACATTTTATCAGAGGAAAGGCTGGGAGATGGTTTTTATACAGAGGGGGAAGTTTTGGtgaaattcagaaaggatgtggAGAGGGTTCCACATAGAGTCAGACAAATGGAGAAGccccaagaagaagaagaagaagaagaagaagaagaggtagTGGAAGTGAATATGCAGCCATCCCAGCCAGAAGACAAGGACGATTGGGTTGTGCTGCTGGACAGCCTCCCACACAAGACTCTTTATAAGCCTCCAGTCATGCCAGCCGACTCCGCTCTGGTGCCTGTGGTCTCCACAAGATTCTCTGTGGTGTTAGTAGACACGGTCGAGCAGAGAGCACCAGAGAGGGAATGCATTGAAGTGGAGGCCACACAGCAACAGCCTGAAAGGGGATTGGTGGAAGGACGGAGATTGTGGCAAATGCAGGAAGATGATTGGTTTATGCTCTTGGACCTGGTTGATCGTGTTCCTTCAGGTGTACCAACCACACCAGTTTCAGCTTCTTTGCAAGAGCAAGTTCAGGTGTACGTAGATGAAACCATCTCTTCCATGGTTAAAGTGATGACAGTggtgcagagagaggagaccagggtgactgtagtggaggagatggagttACAGGAAGACCAGAGCCGTCTGGAACAGAAACtgtcacagagagagatggaagatggCTGGTTTGTTCTGCTGGACATTGTTCCCAGAGAACCATCTGTGATTCCGTCAGTATCTGAGGAATGTGTGTTTGTATCAGCTTCTGTGGAAGAGCGTATTCCGGTATACCCTGAGGAAAGCGTCTCCTCTGTGGTTGAGTTGACGAcagtagagcagagagaggagagaagggtgacTGTAATGGAAGAGGAGCGACGTCAAGAAGAAGTTATACTTCCACCACAGCCATCAAGAGAAATGGACGATGACTGGTTTGTGCAACTGGATGTCGTGCCCAGAGAAACATCCTATATACCACCAGTCGCTCCAGCAGAGCCAACACCGGTTTCTCCAGATGTGATCAGCCCTGTGGTTGAGGTAAAGGCTGAACAGCAGAAGCCAGTGGTGGTTCTGGTGGAGGAGATGAGGCCACAACAGGAACGGGAAGTAGAGGAGTGGCAGCGACAACCAGAGAGAGATGATGATTGGTTTACACTGTTTGCTGATGTCCGTGAGGAGCCGATCATTGTACCACCAGTGGGGTTTGTTCTGTTGGATGCAGTCCGTGAAGAACGTGCTGGGGTTCCACCAGTTTCCCTGGCTGTTAGCGATAGGGTATACCCAGTGGTTGTGCCCGCCAAACATCTGACCATTGAGCCTGAACCAAGAGTGTTTGTGGTGGAAGCAGTCCGATTACTTCCTGAAGACGTTGCCCTGGAGGGTAAGGCAACACAACCGCAGAGAGAGCAGGATGATGATTGGTTTTTGCAGCTGGATGTTGCCCCTAAAGTAGCAGcTGCACCAGTGGTGGTGATTTACTCTGGTGTGAAGGAGACAGTGGAACAGAAACCACCAAAGACCGTGAGGATCATGGAAGAGACTGTTAAGATGGAGGAGGGGCCTGTGGTAACACCTAAAGAAGTGGATGATGATTGGTTTGTGCTCTGGGACCGCGCTCCCTCCAAGATACTGACCACACCCAAGGCGTTCCATGTAGACAGAGAGGTTATAGAGCTGGTACCCCGGAGAACAGTGATTGTGGTGGAGGAAACTAGGAAACCACATAGAGTGGTGGAGGACAGACGTCAACCGGAGGTTGAACTGGTGAAAACACTGCCTCcccaagagagaggggagggtgatgATTGGTTCACGCTCTTTGAAGCCTCTCGCCAAGAGCCTGTGAAAATGCCAACAGtTGCTGTGGTAACTAGACCTGCCCCTGTGGTTGACGTGATGGTGACGAGCACAGAGCAGAGAACCCAGAAAAGGGTGACGAtagtggaggagaggtggagagaggagaggaccctgCAGCAGAGACtgcctcagagacagagagaggtggacgaTGACTGGTTTGTCCTGCTGGATGCTGCCCCTAAAGAATTAGTTGCTCTCCGTGAGCGTCTCCAGGTCTATACTGACATAACTGTGGTCAAAGGTCCAGCCGCTCAGCCCAAACCCAGAGTGGTGGTTGAGGAGGAGAAGACACCAGCACAACCCCAGAGAGATGTGGATGACCATTGGTTTGTGTTGCGGGATAAAAAATTGGTTGCAGTGGTGGCCACCCACAAGGCCGCCCGTCCGGTCAGCGCCCCAGTCTTCTCCCAGGCAGCACTGATGGAGGCAGGGATCCCCATGGCCCCCCTGGACCTCCAGCAGCCCCAGACCTCCACCCCCATCAGGCTGCCAGCCCGCCAGGACGACAGGAAGCTGCAGGTCACCGTGGAGGCAGTGGACGAGGGCTCAGCCGAGGTCAAGAAAAGAGCTAAGAGAACTGAGGGTGACTCAATTTATATCAGACATAGTCTTTTAATGTTGGAGgactTTGAGAAGCCCCAGGAGGATCTCATCAGGCATCATACTAGTATCAGTGAGCTGAAGAGGAACTTCATGGCATCTGTCCCAGAGTCCCGGGGGCCCAGCGAATGGGACAAGCGCCTGTCCACTCACTCCCCCTTCCGCAGCCTGGGCATCAACGGACAGCCTTTACCTGATGCCGACGGGAGTGTGTGTATTACTCCTATAAGGGAAGAGCTGGACACTAAGGCAGCGCTACAACAGGACGAGTCCAGCAACACTGTAAGACCATCGGGggggcccagccccagccctgctAGCACAGAAACTGGGCCTGATAGGGTTGACTCCAAATCCCATGATGCACCTGGGGTGGCAGGGCCATATGTTCAGGATGATGAGCATGTTAGCTCTGGGACCACCACCAGCCACGTACCTGTCGTTGAGGTGGAGAGGGCACAGCTGCCCCACTCCTATCAGCTCCAGGGTACagtgctggaggaggaggagccggCAGACCCAGGGTCGAGGGGGGAGCAGTCTGGGAGGATAACTGGAACCTCCCACACCTCCTATTTCGTGAGCGGTGTTCCCCATGTCATACGCTGTTTCCAGCCCCCTCTGGTGCAGACCCAGACAGTCACCATCACAGACGTGTCCAACTCCCTCCCTACTGACGTCTCCACTAAGGATGTCCCTATCGTTCAGACCCAGACTATCAGCTACGAGTCTGCAGAGGTGTCAGTTGATGGGACAGATGGGGGGAAAGAGGCCACAGCACTGAGCAGCATTCAGTCCATTACCTCAGAGAGCAGCAGGGAAACCAGTGGCacctccatcactaccaccaccactcacaTCTCCAAGGTGGTGAAAGGAGGAGCGTCAGAGACCAGAGTGGAGAAGAGGATCGTCATCACTGCCGACTCAGAGGATGACCAGGGAAGCGACGGCGGAGCAACAGCAATGTGATTCAGCTCAACACACAGTCAGGGAGCCCTATGGATCTGATGCTCAACACACAGTCAGGGAGCCCTATGGATCTGATGCTCAAGACACCAGAGCTTTGTAGTACAGACTAACCTCCCTGTCCCAGAGCCACCCCCACCTCCTCAACCCATACGGACATTGTGTCCTGACTGGTCCCTTCCAGAACCACTGTGGTTACAtctcttgaccagagccctggttaaaagtagtgcattataaagggaatatggtgccatttgggatgcatcctggtGTCTCCCTGCCCAGTGGGATATGAACAGGCCAGGGAGAAAGCCTATTGTGTCCTCTCTTTCCATACTGCTGTTCTGACTGTATGTTGGCTTCATTTTGGTCTATTCCACTCAAACTCATATTTCGCCAAATTACTTTTTTTTGTATCATTATAGTAGGAAAGATGAACCTTTTCAGTTCTAAGAGCATTTAGGTCATTTGCgtttaaatgtttatttacaaCATATTTTTCTGTCGTTTGTATTGCCACTACTGTGTCATTGAGTTTAAGTGTGGACTCAGCGATATGACggagatgcagaaagtaaacagggTAGTGGGTCAATTTCAGCCAAACAACTAAGAACGTTGAAGCGAGAGGCTCGACTTCTCCGCTGTTTTGGTGCCATGGTTCCAACGCTGTGAACAGAGTGAAGTGAACCcgtgcacatgcgcagatactgTGTGAGAGCCAAGTCTTGCATCTGGCTCATCTCAGTATCTGCGGTGCTGGTCGAGGCAACGGCATTTTACTGAGTCTCCCTTTAACATGCTCATTTTGACAGAAATGCACTGTTTTCAACTGGGCTTTAAGTAATAACATTATCAGACTTTTTCAATCAGATTAAGATGCCGGACAGAAACTAGACCTATTTTTGGAAAGGGATAACTCCTTTGAGTTTGTTTATGTTTATAATTGAGGAATATTCTTTTTTTTGATTGAATATTCAAATTGAAATGACATACCTCACTTAAAAGTATTGAACAAAGATATTGCATACTCCAACAACCATGCCTGTTTTGGATTTGTTCTCTGCTCAGGTAAACTCTCTCTTTCTTAACCAGCCAAGTTAACATGTGTAATACTACTAGGTCAGGCCACGATGACCCTCGGTATAAACTTTGACGTGATGACAACTATCTGTTTTGAAATGTTTACTCTATTTTATAGCATTACTGCTTTTATAGTATTTGTACAAAATGAGGTGTTTAAGTTATTGAAGTTCATATCCTACTCAATGGTAGCTTCTCATATCAAtattgtcttcttttttttttacagcttgaATTTGGGAGTGCCCCCATGTTTCCCAGTACATATTCACCATTGTTTTTCTTCCTCTTTTAACGCACCATTGACCTCTAGGACTGCCCCATGCAGTCTGACGTGAGAGCAATGGAAAGTCCCGCTGTGTTTTGTCCCTTAAAATGATTTTAGATAGAAATGTGGTTGATTTGATGAAACAATGCTTTAGTCTGTTTCTCAGGTTTTATGTCTTTATCAATACTGCAGGACAAAACCCCTCTGTATATGATTGTATGAAGAATGTTCAGTCTTAATGTACATTCTAGCCCTGCAGATGGGTCCAAATGATTCTCAGCTCTTAAACACTTAAACCTGTGCAAGATGTATTTATCACTATCAAAAGGCAGCTGTCCCAGTGTATGTGGCTTTTATTTCATACAGGGGAACATATTTAGTCCTTTTGTACATGTTCTACCATCATTTCTTTGTAAAGTAGAGACTGTTTCATGTGATTCTTTGTACTGGGATGTTTTTTAAAACACGAGCCTGTTCGCAGGCTTTTAGACACAGAAGTCACATTCATAATCATCTAGTTTGTAAATCTTTCTTACCACCTGTTTTAGAGTAGATTCCTCTACCAGTTGGTGTACCCTGTCCTTTTGTAGATCAGATAAAGATACTTGTATGAGAACCCCTTTAGAGAATGACAATTGGTAGCAGACCTTTCTTCCCCTCTGAAGAAGTTTGTGAAGGTGGCACAAACTATTAGCTAGAAGGATCTTGAGGGCATAAACTAGAATCTCAGCGGAACCCTTCGTTTTTAGATTTGTAAACTTATTGCTTTTGTGACATATCCCTGTctttaaaattaaataaaatcagGATGAATTATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247135 lncRNA downstream 1411 3020245 ~ 3021397 (-) True G216911
TU247152 lncRNA downstream 10773 3011762 ~ 3012035 (-) True G216925
TU247144 lncRNA downstream 18097 2997810 ~ 3004711 (-) True G216920
TU247104 lncRNA downstream 61979 2960045 ~ 2960829 (-) True G216893
TU247102 lncRNA downstream 63799 2958556 ~ 2959009 (-) True G216892
TU247161 lncRNA upstream 6388 3065153 ~ 3065479 (-) True G216934
TU247165 lncRNA upstream 15233 3073998 ~ 3074430 (-) True G216938
TU247170 lncRNA upstream 23127 3081892 ~ 3082106 (-) True G216942
TU247172 lncRNA upstream 27413 3086178 ~ 3086802 (-) True G216944
TU247173 lncRNA upstream 29043 3087808 ~ 3088229 (-) True G216945
XM_036965775.1 mRNA downstream 25383 2992224 ~ 2997425 (-) True LOC110520729
XM_036965771.1 mRNA downstream 25385 2992224 ~ 2997423 (-) False LOC110520729
XM_036965779.1 mRNA downstream 25387 2992224 ~ 2997421 (-) False LOC110520729
XM_036975425.1 mRNA downstream 34536 2963646 ~ 2988272 (-) True LOC118964349
XM_036963137.1 mRNA downstream 106453 2889071 ~ 2916355 (-) True c4b
XM_036965873.1 mRNA upstream 32767 3091532 ~ 3098159 (-) True LOC110520730
XM_036975426.1 mRNA upstream 40503 3099268 ~ 3106240 (-) False LOC110506763
XM_036965874.1 mRNA upstream 47806 3106571 ~ 3120111 (-) True LOC118936609
XM_021586699.2 mRNA upstream 93244 3152009 ~ 3162923 (-) False LOC110506836
XR_005040124.1 mRNA upstream 178710 3237475 ~ 3238019 (-) True LOC118944808
TU246996 other downstream 284341 2736861 ~ 2738467 (-) True G216811
TU246045 other downstream 897456 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 900951 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 964379 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 1070220 1926744 ~ 1952588 (-) True LOC110516567
TU247540 other upstream 279421 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 627637 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 1380331 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 1380331 4439096 ~ 4440437 (-) True G218073
TU249887 other upstream 1479897 4538662 ~ 4540441 (-) True LOC118944829

Expression Profile