RNA id: XM_021586648.2


Basic Information

Item Value
RNA id XM_021586648.2
length 1360
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110506785
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3058329 ~ 3076503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCACAGGGAATAGGGAGCTATAATATATATTTCAGCCCTTCCTGATCTATTTTACTGATGCTATTCCTTTCTTTCACTCGTCTGGACTGGATCCCTGTACCTCGTCCTGTCTGGGATGTCTCCTGTGTTTCCATGCTGATGTTTGTGTGTACCATGACAACAGAGGCTAGCGCGGTGGGCGAGGCGGACACAGAGGGCAAGCCGAAGCCCAGTGtagcagaggcagagagaagaccGGAGAACAAGCAGAGCTCGGAGGCAGAGATACAACTGGAGAACAAGCAGAGCCCAGAtccagaaacagagagagaaccgGAGAACAAGCCGAGCCCAGAgccagaaacagagagagaaccgGAGAACAAGCCGAGCCCAGAGGCAGCAGCACCGgagccagagagggagaagcCCAGCCAGAAGACCCAGGAGCAGGACTCAGAGCCTGGCTCCACAGAGAGCCCCATCTTCACCACCACCACTGAGGAGGAGCAGCTAGTGAAGCCCCGCCAGCGCACCTCAGCCAGCCGCGGCCTCTCacgcctcttctcctccttcctcaaACGGCGCTCGCAGTGCTCAGACGTAGAGTGGGCTGAGGtcgagaaggcagagaaggacaGGAAAGAGAAGGCAGAGGCTGGAACAAAGGAGGAAAAGTTAGAGCAGGCCaagggggaggagaagaaagaggcagaggaaaggggggagaagaaagaggaggaagaagcaGCAAAGAAAGCAGAGAAGAAAGAGGAAGAAGCAGCAAAGAaagcagagaagaagaaagaggaggaagaagaagcagCAAAGAaagcagagaagaagaaagaggaggaagaagaagcagCAAAGAaagcagagaagaagaaagaggaggaagaagcaGCAAAGAAAGCAAAGAAGAAAGAGGAAGAAGCAGCAAAGAaagcagagaagaagaaagaggaggaagaagcaGCAAAGaaagcagagaagaagaagaagaaagaaggggAAGAAGCAGCAAAGAAAGAGGCaGggaagaagaaagagaaagaaaataaagaggaggagaaggggaagaagAACGAGGCGAATAAAGAGGTAAAGAAGAACGAGGAGAATAAAGAGTTAAAGAAGAAAAAACGGAAGGGCAAAAAGAAAGCAGGGGAGGAGCACAAAGCAGGGGAGCAGTCCACAACAGAGGTGCAGGTGAAAGCCCCCATCGCGGCCCCGGAGCCAGAGCTCAGAGCAGAGGCGGAGGGGGAGGCTGAacaggagaggcaggaggagccGGTAGAGGACCAGGACCATCACTCCATCAGCAGTGCAGAGACACAGGTGagtgagggagacagacacagtgaacTTCTCACCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247135 lncRNA downstream 36932 3020245 ~ 3021397 (-) True G216911
TU247152 lncRNA downstream 46294 3011762 ~ 3012035 (-) True G216925
TU247144 lncRNA downstream 53618 2997810 ~ 3004711 (-) True G216920
TU247104 lncRNA downstream 97500 2960045 ~ 2960829 (-) True G216893
TU247102 lncRNA downstream 99320 2958556 ~ 2959009 (-) True G216892
TU247170 lncRNA upstream 5389 3081892 ~ 3082106 (-) True G216942
TU247172 lncRNA upstream 9675 3086178 ~ 3086802 (-) True G216944
TU247173 lncRNA upstream 11305 3087808 ~ 3088229 (-) True G216945
TU247174 lncRNA upstream 11806 3088309 ~ 3088542 (-) True G216946
TU247129 lncRNA upstream 27643 3104146 ~ 3105065 (-) False LOC110506763
XM_036965775.1 mRNA downstream 60904 2992224 ~ 2997425 (-) True LOC110520729
XM_036965771.1 mRNA downstream 60906 2992224 ~ 2997423 (-) False LOC110520729
XM_036965779.1 mRNA downstream 60908 2992224 ~ 2997421 (-) False LOC110520729
XM_036975425.1 mRNA downstream 70057 2963646 ~ 2988272 (-) True LOC118964349
XM_036963137.1 mRNA downstream 141974 2889071 ~ 2916355 (-) True c4b
XM_036965873.1 mRNA upstream 15029 3091532 ~ 3098159 (-) True LOC110520730
XM_036975426.1 mRNA upstream 22765 3099268 ~ 3106240 (-) False LOC110506763
XM_036965874.1 mRNA upstream 30068 3106571 ~ 3120111 (-) True LOC118936609
XM_021586699.2 mRNA upstream 75506 3152009 ~ 3162923 (-) False LOC110506836
XR_005040124.1 mRNA upstream 160972 3237475 ~ 3238019 (-) True LOC118944808
TU246996 other downstream 319862 2736861 ~ 2738467 (-) True G216811
TU246045 other downstream 932977 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 936472 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 999900 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 1105741 1926744 ~ 1952588 (-) True LOC110516567
TU247540 other upstream 261683 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 609899 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 1362593 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 1362593 4439096 ~ 4440437 (-) True G218073
TU249887 other upstream 1462159 4538662 ~ 4540441 (-) True LOC118944829

Expression Profile