RNA id: TU247385


Basic Information

Item Value
RNA id TU247385
length 1483
lncRNA type sense_over
GC content 0.44
exon number 3
gene id LOC118936611
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3507608 ~ 3533097 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggaatagggtgccatttgggactcattcaCAGTTTGAAAGGCCTGCAGGCCTTATCAGAAGGAGTATCCACCTCATACACAGGATCTAATGTTGGACTATTTTTCTTAAACGTGACTCTGTAGATGGTTGTTTAAACTGCACATGAATATTTTCACTCCATTTCTAAattgaaaacattttttattgattttattttgTGATTGTACAAAATGGTTTGAGTGACCGATCAACTTTTTTAGATCAAACTTAGTTTCCCCACAGACAGAATGATATAGGAGTCCCTATGTTACTGTGACCTCACTAAAGATGCTGCAGTCACAGAGGATCCAGTTCAGAACAATATAGGAGTCGCTCTGTTGCTGTGACCTCACTAAAGATGCTGCAGTCACAGAGGATCCAGTTCAGAACAATATAGCAGTCGCTCTGTTGCTGTGACCTCACTAAAGATGCTGCAGTCACAGAGGATCCAGTTCAGAACAATATAGGAGTCGCTCTGTTACTGTGACCTCACTAAAGATGCTGCAGTCACTGAGGATCCAGTTCAGAACAATATAGGAGGTGCTCTGTTACTGTGACCTCACTAAAGATGCTGCAGTCACAAGAGGATCCAGTTCAGAACAGTATGGGAGTCTCTCTTACTATGACCTCACTAAAGATGCTGCAGTCACAGAGGATCCAGTTCAGAACAATATAGCAGTCGCTCTGTTGCTGTGACCTCACTAAAGATGCTGCAGTCACAGAGGATCCAGTTCAGAACAATATAGGAGGTGCTCTGTTACTGTGACCTCACTAAAGATGCTGCAGTCACAGAGGATCCAGTTCAGAACAGTATGGGAGTCTCTCTTACTATGACCTCACTAAAGATGCTGCAGTCACAGAGGATCCAGTTCAGAACAATATAGCAGTCGCTCTGTTACTGTGACCTCACTAAAGATGCTGCAGTCACAGAGGATCCAGTTCAGAACAGTATGGGATTCCCTATGTTACTGTGACCTCACTAAAGATGCTGCAGTCACAGAGGATCCAGTTCAGAACTTTATAGGAGTCGCTCTGTTACTGTGACCTCACTAAAGATGCTGCAGTCACAGAGGATCCAGTTCAGAACAATATAGGAGGTGCTCTGTTACTGTGACCTCACTAAAGATTCTGCAGCCATCGAAGATCCAGTTTAGAACAGTATAGGATTTGCTGTTACTGTGACCTCactaaggggcggcagggtagcctagtggttagagcgttggactagtaaccgaaaggtttcaagttcaaatccccgagctgacaaggtactaatATGTCGGTCTGGCCCTGAGCAAGCAGTCGGTCAGAACAATATAGGAGTCGGTCTCTTTTACTGGGACCTCACTATGCCACAGAGGATCCAGTTCAGGGTCAGTCAGTTACATTCCCTATTATAAACACCATCCACTAACTCTCTTCAGTCTATTGACATGTATATCATGAAAACACTCAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247387 lncRNA upstream 17122 3507709 ~ 3512975 (+) False LOC118936611
TU247359 lncRNA upstream 39414 3490374 ~ 3490683 (+) True LOC118944810
TU247323 lncRNA upstream 161200 3368331 ~ 3368897 (+) True G217081
TU247320 lncRNA upstream 163884 3365829 ~ 3366213 (+) True G217079
TU247315 lncRNA upstream 168907 3360859 ~ 3361190 (+) True G217074
TU247479 lncRNA downstream 154529 3686596 ~ 3688096 (+) True G217220
TU247484 lncRNA downstream 178730 3710797 ~ 3711204 (+) False G217223
TU247485 lncRNA downstream 178730 3710797 ~ 3711204 (+) True G217223
TU247405 lncRNA downstream 218403 3750470 ~ 3754296 (+) True LOC110493965
TU247519 lncRNA downstream 267854 3799921 ~ 3802530 (+) True G217244
XM_036965926.1 mRNA upstream 22980 3494116 ~ 3507117 (+) True LOC110520734
XM_036965917.1 mRNA upstream 38129 3459132 ~ 3491968 (+) True LOC110520733
XR_005040131.1 mRNA upstream 39611 3487998 ~ 3490486 (+) False LOC118944810
XM_021586778.2 mRNA upstream 216625 3310514 ~ 3313472 (+) True LOC110506902
XM_036965885.1 mRNA upstream 287886 3202626 ~ 3242211 (+) False LOC110506857
XM_036965950.1 mRNA downstream 2452 3534519 ~ 3556267 (+) False LOC110520752
XM_036965955.1 mRNA downstream 2452 3534519 ~ 3556267 (+) False LOC110520752
XM_036965960.1 mRNA downstream 2452 3534519 ~ 3556267 (+) False LOC110520752
XM_036966028.1 mRNA downstream 26213 3558280 ~ 3707777 (+) False LOC110520760
XM_036965972.1 mRNA downstream 27439 3559506 ~ 3707777 (+) False LOC110520760
TU247395 other upstream 48561 3480316 ~ 3481536 (+) True G217146
TU246830 other upstream 421864 3106354 ~ 3108233 (+) False G216673
TU246814 other upstream 421864 3106611 ~ 3108233 (+) False G216673
TU246775 other upstream 488580 3039986 ~ 3041517 (+) True G216640
TU246778 other upstream 510263 3017164 ~ 3019834 (+) False LOC110506718
TU247382 other downstream 3110 3535177 ~ 3537259 (+) False LOC110520752
TU247383 other downstream 5772 3537839 ~ 3539906 (+) False LOC110520752
TU247379 other downstream 8732 3540799 ~ 3544478 (+) True LOC110520752
TU247417 other downstream 194463 3726530 ~ 3729156 (+) True LOC110507370
TU248166 other downstream 610576 4142643 ~ 4143089 (+) True G217809

Expression Profile