RNA id: XM_036965960.1


Basic Information

Item Value
RNA id XM_036965960.1
length 4987
RNA type mRNA
GC content 0.50
exon number 25
gene id LOC110520752
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3534519 ~ 3556267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acctgctgaccctgttaacaactaacctgctgaccctgttaacaactaacctgctgaccctgttaacaactaacctgctgaccctgttaacaactaaccttcTGACCCTGATAACTAACcagctgaccctgttaacaactaaccttcTGACCCTGATAACTAACCAGCTGACCCTGataactaacctgctgaccctaaCACTGTTAATTAACAGGGTATTGGTGTATAAATGGAGGATAGGTAATGAATGCACCTTTAAATATCAAAATGATGTCCCTCCCCAAATGTGCGCAAATGTAATTAAAATAACCAGCAGCAGTTGCCTTCTTTGAAGAAGCTGAATCTTTATGCCTTTATTGCGACTTTGTTAACACTAAACTTAAATTGAGTGTCGTTGCATTGTTACAATGTTGCACATTGCTCACTAGATGGCACTATAACAAAGTCGATAGAGAAACTGAATGAGTCTTCTGACATAATTTATTATAGCAGTTTTGTTAAGTAGGCAATGCAGCTTCTTAACTTCTACGACAGCAAATTAGAATGCACGAGGTTTTGAATTCTTTACAAAAGTAGGGGCAACTGCATTTTTCCAGTACGCATGATTTTGTATCCTTTCTGAAAGCAGGAAGCAGCACGCTGTTAATCCCAGTCAGACAGATATCAGTATTTCCTGGGAAGGTCAAATCAACTGCATTGTTTACAAAGGTGTTTTGATTGTGTCTTTCGGTGGCTACAAATTCATTCAAACGAATGTCAGTGACTTTGGCCCGTGATCTTGGATTACCGATGGACCAACAGCACAAATCCCATGCTTGGATGTGATTCCACCATTGTGAGCCTGATGTACAGAGGAGGAAGGACCGGTTCTGATGGCAGACCATCTTCCCTCAGGGCTACTGGAAGCGTGTGTTGTTGTCGGAGCCTCTGGGGATAAACTCAAGGATGTCTATCAGTCTCTACAGCAGGGCAACAGCACAACAGACCTCCTTATTTTAGACCCAGAGGTCTTGCAAGTCCACGTGCCTCCGTTTGTGACCAAAGAGAATGCAGATGAGTCTGGTGTCCCCAGAACCTTCAGTCGAGTCCAGTGCAGACGGTCCTTCATCAAGAAGAAGGAGAGGCTAGTGGTGGCTCCTAGTGGCCCTGGAGGGGCCGGGAGCAGTGAGGGGGCCACTGTCACGGAGGATGTCAGCGTCCccaaggacattgacctcatggCCCTGCCCCAACTCTGCTTTCCAGGGGGGCTTCAAGTAACAAATGAACCAAAAGAAGAGCGTTTTCACTTTCTAGTCTTCACGGATGTGTTCGGTAACCAAACCCATGGAGTGGTGGTTCAGTGTTGTAGACCATTTCAGGAAGGGTCAGTGTTCTATCAGAATGGACACTGGTCGTCCACCAGGACCGCTAAGCTCTACACTGCTTTTGCCATCTGTGTCATATCCAAGCATCCTTATTACAATGCTCTGAAGGACTGTCTGTCTTGTTTGCTGGCGCAGCTTAGAGCAAGCAGGTTGTCTGAAGAGAGGGTGAAGGAATTTGCAGCCAAACTGTCTCTAGTGCCCATTCCACCCCCTGGACAACTACATGTGGTGTTCAACCTGAGACCCCTGATGATCGTACTGCCTTCCAGAGAGGATAAGGAACACCCCGCTGTAGACCTGGACCTCCATTTGCCCTTCCTGTGCTTTAGATCCAAACAGATTTTACAGATCATCACTGGTATTCTGATGGAGCAGAGGTTAGTGTTCTTCTCAGCTGACTGGGCCCGCCTCACCCTGGTGGCAGAGTGTTTCATGTTCTACATCCACCCCCTCCACTGGCAGCACCCCTACGTGCCCATCCTCTCAGCCCAGATGCTGGACTTCGTCATGGCCCCCACCGCCTTCCTCATGGGCTGCCACCTCAACCATTTTGAGGAGGTCGCTGCGGAAACAGACGACCTGATCTTGATTAATATTGATGATGGAACAGTGTCTTCTTCCTGCTCAGAGACTGTCGACCTACCAGACGTCCCCTTCGTTTCTGCAGAGTGTTTTACCAAGCGGAGGAAGGGCCTCCAGCTACAACATGATCTAGAGGTGTGTCACCAAGGGGCCGGCACAGACGTTAATGAGATGCGCATGCTGAGGAGACAATGGCAGCAGAACCTGAACTGGGAAATAAAGAAGGTTACCTTGGAGCTCATTGTCAACATGTTCAGGGATGTCAGTGGTCACCTGAACTATGAACACCGAGTGTTTAACAGTGAAGAGTTCCTGAAGACCAGAGAGCTAGCTGACCTTCCCTTTTACAGAAAGGTCTTGGAGACACACATCTTTCATTCATTCCTGAAGGACCGCCTCAATAGGAAGATGGATGCTTTCACACGCATGGAAGTCAACACTCGCTCAGAGACACAGAAAATGAAGGCGATGACAGACAACCCCAGGAGGCCCACCATGCAGGAAATGGCCAGGAAGTATAGCAGCGACCCAGAGATCCGTCTGAACAAGAGGCTGGGGATGAGCCTCCCCAACCTGGGAGAGGAGCGCCATCTCAACCTCCTCAGACAAACCTCCCTCAAGAAGACCATTATCCCTGAAAGTGCCTTCAAGATCCCGCCCAAGCCTGTGAAGATCTTCAAGCTGCCAGAATTTCCTCCTCCCATGGTGCACCACCATGTCCAGAACTACTATGGAGAGTTGATGATACTACTGGGGAAGGCCATCTCCTGTGTTCCTCCTGAGAACTCCACCCTCCTGGCCAGGTACTTCTACCTGCGCGGCTTCATGAACACGCTGTGTTCCAAGCGTCTTGACGCCCTCAGTGACTTCCAGAACCTCTACAAGACGGACATCGAGATCTTCCCCACCGACCTGGTAAAGGCGCTAGTGGACTCGCTGCAGAAGGACGAGTTCTCCCAGGTGGACCGGCGGCCAGAGCTCAAGCGGCTCATCTTCAAGGTGAAGACAGACAACGAGAGGGTGCTGGTCCAAGATGACGACCACGTGAAGAAGTTCCAGCTCCCTAAGACCCACATGCTGCAGGAGGACTTTGTGAAGCGCATCCAGGAGTCTGGGATTGTGAAAGACGTCGCCACCATCCATAGACTGTTTGAGGCCCTCACTGTGGGGCAACAGAAGCAGATTGACCCAGAGGTGTTCCGTGTGTTCTACACCTTCTGGAAGGAGACGGAGGTGGAGGCCCAGGATGTTCACCTACCAGCTGAGGTCATGGAGCACCTGGACAACAACGAGTGTGTCTACAAGCTGTCCTGCTCCGTCAAAACCAACCAGGGAGTGGGTAAGATCGCCATGACACAGAAGAGGCTGTTCCTGCTCACTGACGGGAGGCCTGGGTTTATCGAGATCACCAAGTTCAGAGACATAAAGGAGGTGAATATCTCCTTTTCTCCTTTCCTGCTGCTGAGGATCCCGTCTCTGAAGATCAAGTGCAGTCTGAGGAAGGAGGTGTTTGAGGCCAACCTGAAGTCTGCGTGTGACCTGTGGAATCTCATGGTCAGAGAGATGTGGGCTGGGAGGACGATGGCAGACGACCACAAGGATCCTCAGTACATGCAGCAGGCTTTGACTAACGTCTTGCTCATGGATGCTGTGGTTGGCTGCCTTCAGACCCAGAAGGCCATATTTGCCGCCTCCAAACTGGCATACTTTGACAGAGTGAAACATGAAGTTCCTGTGATGGTTCCAAAGACAACATTGGAGACGTTGAAACACAAGATCAATCCATCACTAGACCTCCCAGCCCCACAGACTGTACATGTCTTACTCTACACAccagGCCAGTTGAGTTACTCGGAGGCAGACGGAGATGGGAACCCCAAGCTGTGGTGTGCCCTCAGTGGTGGGAGGGTGGTTGTGTTTGATGCAGCCAGCTGGTCCATGCAGCAGAACTGTGTTCAAGTGGGATCCTCCCAACTGAACTGCATGCTGGGATTGGACCAGGATCAAGTATGGATTGGCTCCCAGGATTCCATCATTTACATAATTGACACTCGCAGCATGTCCTGCAATAAGCAGCTGACAGAGCACAGGCATGAGGTTATGGACTTTGCCCTGGAGGAGAGTGACAAGATGAGacAGACATACTCCTGTAGTGCCGATGGAACAGTCATTCTGTGGGACCTCTCAACGCTAAAAGTGAAAAagcagtttcaactgacctgtgATAGGCTTATGTCCATTCAGCTCTTCAATGGAACACTGTGGTGCTGTGCCAGAGACGGCATCGTTGAACTGAGGAAGAACGGAACCCCACATCGTAAGATGACACTTCCTGAGGATCTACGGAGCATTCCCACTGAGTTCAGCAGCCTCATCCTCTTCTTAGAGAGGGGCCAGTTGTGGACGAGCTGTTCTGATTCTGACGAGCTCTGTCTCTGGCACTGTGAAGACCTGACCAAGCCTTTCCTGAGGGTGCGGCTGCAGAACTGTACAGGGGTCAACTGTATGATCAAGGTTAAGAATCAGATCTGGGTTGGCTGCAGCGGGCCGAGCCCTGACCAGTGCAGGATGAGTGGGAAGATCTACATAGTGGACACAGAGAGCCACAGTGTAGAGAAGGAGCTGATggcccacacagacagtgtccaGGCACTGTGCTCTGCAGAGGGCCGCTATGTACTCAGTGGCTCCGCCTGCCAGGATGGCAAAATCGCCATTTGGAAGGTTGAGTAGAGGACGAGTAGCCTGGTCCAGTATCTGTTTGTGTGGTTTTGCCAACTCTTTTAAGTGAATGAAATGTTTGGCACAACAATGACAGGAGTTTCCTAAACAGCAGAAATAGATGTGGGACCAGGTTAGAGGAAGAGCCCTGCAGACCCCGAGGAGTCCTACAGGTCTGAAGAGGCTATAGcctctcaaactcaactctggacctggaagccagttccactgctttgtttcattgttcccctctaatcagggactgatttagacctgggactccaggtgggtgattcccctctagtcaaggactgatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247385 lncRNA upstream 2452 3530097 ~ 3532067 (+) False LOC118936611
TU247386 lncRNA upstream 2452 3530097 ~ 3532067 (+) True LOC118936611
TU247387 lncRNA upstream 21544 3507709 ~ 3512975 (+) False LOC118936611
TU247359 lncRNA upstream 43836 3490374 ~ 3490683 (+) True LOC118944810
TU247323 lncRNA upstream 165622 3368331 ~ 3368897 (+) True G217081
TU247479 lncRNA downstream 130329 3686596 ~ 3688096 (+) True G217220
TU247484 lncRNA downstream 154530 3710797 ~ 3711204 (+) False G217223
TU247485 lncRNA downstream 154530 3710797 ~ 3711204 (+) True G217223
TU247405 lncRNA downstream 194203 3750470 ~ 3754296 (+) True LOC110493965
TU247519 lncRNA downstream 243654 3799921 ~ 3802530 (+) True G217244
XM_036965928.1 mRNA upstream 1422 3507608 ~ 3533097 (+) False LOC118936611
XM_036965932.1 mRNA upstream 1422 3511671 ~ 3533097 (+) False LOC118936611
XM_036965941.1 mRNA upstream 1422 3513573 ~ 3533097 (+) False LOC118936611
XM_036965926.1 mRNA upstream 27402 3494116 ~ 3507117 (+) True LOC110520734
XR_005040131.1 mRNA upstream 44033 3487998 ~ 3490486 (+) False LOC118944810
XM_036966028.1 mRNA downstream 2013 3558280 ~ 3707777 (+) False LOC110520760
XM_036965972.1 mRNA downstream 3239 3559506 ~ 3707777 (+) False LOC110520760
XM_036965967.1 mRNA downstream 22503 3578770 ~ 3707777 (+) False LOC110520760
XM_036965974.1 mRNA downstream 22503 3578770 ~ 3707777 (+) False LOC110520760
XM_036965983.1 mRNA downstream 22712 3578979 ~ 3707777 (+) False LOC110520760
TU247395 other upstream 52983 3480316 ~ 3481536 (+) True G217146
TU246830 other upstream 426286 3106354 ~ 3108233 (+) False G216673
TU246814 other upstream 426286 3106611 ~ 3108233 (+) False G216673
TU246775 other upstream 493002 3039986 ~ 3041517 (+) True G216640
TU246778 other upstream 514685 3017164 ~ 3019834 (+) False LOC110506718
TU247417 other downstream 170263 3726530 ~ 3729156 (+) True LOC110507370
TU248166 other downstream 586376 4142643 ~ 4143089 (+) True G217809
TU248238 other downstream 741289 4297556 ~ 4302856 (+) False G217870
TU248288 other downstream 895487 4451754 ~ 4452556 (+) True G217896
TU248792 other downstream 1380830 4937097 ~ 4939894 (+) True G218309

Expression Profile