RNA id: XM_036965974.1


Basic Information

Item Value
RNA id XM_036965974.1
length 4792
RNA type mRNA
GC content 0.53
exon number 35
gene id LOC110520760
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3558280 ~ 3707777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACTCGGCAGCAGGgtttaacagcagcagcagcagcagcagcttgtCCTGGATTACAAGGCTGTCACATTGGAGTAGACAGGCGGTTGTAGTGCTGAACTAACTGAAGGATTGTTTTGGTTTTTTGCCTCCTCTGTGTCTTCTACTACACTGTTTTCCAAGTCAGCTGCCTCCCGGGCTTGATTAATTTACAAGGCTGTGCAGAGGCACGCAGAGGGATTATTTAGAGGCTGGAAGCCAACGCTGAGGGGATCTGAAGAGGAATCGGAAGATAAGGAGCTGACAACACAGACCTGTCCCATATTgatcttctgtctctctgtctccgtctctgtctctgtctctctctctctctctctctctctctctctctctctctctctctttctctctctatctctgtctctgtctctctcactccctcttggAGTGACACCAAACACCTCTGACCCGGAAACAGCCTGTCTGTCAGGCAAGGTGGATGTTAGGATTAAAACCTCTTGAGGATTTCACTGAGTTGCTCCCTTGACGtcttctcctcctcaccccaCAGTTTTCTCCCCTGAGGCAGGGCTGTGTGATCGGGTCCGAGGGGGGCAGCGGTAGGGGCTGTGAGGAGCGGAGAGGGGCTGTGCCGGGGTCCTCAGGGGCAGAGGAAGAAGCAGCAGCCTGGCCTGGCCTCTATGCGGTTGTGGAAGGGGACAGGGTCAGGGAGCCTGGGGCTGGTTCAGGCTGCAGGGTCTGGTGGTGGGATAGAAAGACAGGCGCTGCTGCGGCCATCATGGAGAGGAGTGGCTGCATCCCCCTATGCTGGGCCCGGGGCGCCTGTGTTTATGCTCAACACCCTCCACTCCCAAAATATGACAGACAGCTAGCCCCCACCAAAGGAAGCATGGCGTCAGCGTACCTGGACCCCAACCTGAACCACCATGCTGGGTTGGGCGGTGGGGTGTCGAAGCCGGGGACCATGGACCGCGTGCTCAAGATCCACCACTACTTGGAGAGCAACAGTGAACCATCCACCTGGGCCAGCCACATCCGCCACGGAGACGCCACTGACATCAGGGGTATCATCCAGAAGATAGCAGACATCCACAAGGTGAAGTGTGTTTCCTGTCTGGGCCTGCGTCTCAGCCACCTGCGCTCAGGGAACATCCACTGGCTGCACCCCGACATGGGGGTGTCCCGCGTCAGGGAGAGGTACGAGCTGCTCCACCCTCAGGACGAGTGGAGGTATGAGCTACGGATACGCTACTTGCCAAAAGGATTCTTGAACCATTTTTCAGAAGATAAACCTACACTGAACTACTTCTACCATCAGGTCAAGAGTGACTACATGTTGGAGGTAGCTGATCGAGTCGACCAAGACATTGCACTTAAATTGGGCTGCCTTGAAATCAGGAGATTTTTTAGGGAAATGCGAGGAAATGCCCTGGATAAGAAATCAAATTATGAATTATTAGAAAAAGATGTGGGTTTACGAAGATTCTTCCCCAAGAGTTTGCTGGACTCTGTGAAGGCTAAACCACTAAGGAAACTCATCCAGCAGACCTTCAAACAGTTTGCCAACCTAAACGATGAACAGAGCATTCACAAGTTCTTTGAGATCCTGTCTCCTATTTACAGATTCGACAAGGAATGTTTTAAATGTGCCCTTGGGtccagTTGGATTATCTCTGTGGAGCTTGCCATTGGACCTGAGGAGGGCATCAGCTACCTGACAGACAAAGGCTCAACTCCGACACATCTGGCCAACTTCACCCAGGTACAGACCATCCAGTACTCCAGCACGGAGGACAAGGTGCGCCAGGGGATGCTGCTGCTCAATGTGGCTGGAGCACCtgagcctCTGACGGTGACCACAGCGTCTCTGAACACGGCAGAGAACATGGCGGACCTGATAGATGGATACTGTCGCCTGGTCAACGGAGTCTCCCAGTCCTTCATCGTCCGTGTTCAAAAGGagggagagagagcgctacCTTCCATCCCAAAGTCCACCCCGAAAGTCTCCAACCATGAGAAGCGTCTGGATGGGGGGGTCCGGACAAGGGTTGCATGTGTCTCAGGGGATTTAAGTGGGGACGAGACAGACGACTATGCGGAGATCATAGATGATGAGGATACCTACACCATGCCCTCCAAATACTATGGACTAGAGGAAGccagggactatgagattcaGAGACAGAGGATTGAGCTGGGTCGCTGTATCGGAGAGGGACAATTCGGGGACGTCCACCAGGGAGTCTACATGAGCCCGGAAAACCCTGCTCTGTCTGTGGCCATCAAGACGTGTAAGAACTGCACCTCTGATAGTGTCAGGGAGAAGTTCTTACAAGAAGCTTTGACCATGCGTCAGTTTGACCACCCCCACATAGTGAAGCTGATTGGAGTGATCACAGAAAACCCCGTGTGGATCATCATGGAGCTGTGTACACTGGGAGagCTACGCTCCTTCCTGCAAGTGAGAAAATACAACCTCGACTTGGCATCACTGATTCTCTATGCTTTCCAGCTAAGCACAGCACTTTCCTACCTGGAGAGCAAGCGGTTTGTACATAGGGATATAGCTGCCAGGAACGTGCTGGTATCCTCAGTGGACTGTGTTAAACTGGGAGACTTTGGCTTGTCTCGATACATGGAGGACAGCTCCTATTACAAAGCCTCCAAAGGGAAACTGCCTATCAAATGGATGGCACCAGAGTCTATTAACTTCAGACGCTTTACCTCAGCCAGTGACGTGTGGATGTTTGgtgtgtgtatgtgggagaTCCTCATCTACGGAGTCAAGCCCTTCCAGGGGGTGAAGAACAACGATGTCATCGGCCGGATAGAGAACGGAGAGCGTCTGGCCATGCCCCACAACTGCCCCCCTACCCTGTACAGCCTGATGACCAAGTGCTGGGCCTACGACCCTAGCAAGAGACCCTGCTTCACAGAGCTCAAAGCCCAGCTCAGtcAGATATTGGAGGAGGAGAAGCTCCAGCAGAAGGAGAGGACACGTATGGAGATGAGACGTCAGGTCTCCGTGTCCTGGGACTCAGGGGGGTCCGACGAGGCGCCGCCTAAAGTTTGGCCTCGAGAAGCTTACTGTGAAAAGccCAGCAGACCAGGGTACCCCAGCCCACGCTCCAGTGAGGGGTTCTACCCCAGCCCACAGCACCTGGGGCAGCCCACCCACTACCAGATGGCAGGATACCCAGGCCCCAGTGGGATGTACCCTCCCCAGGCATCCCACGATCCCCATGACACCTGGAACCACCACCGGCAGCAGGACCTCCCCATGTGGTCTCCCAACATGGAGgacAGGGGGTCTCTGGACATGCAGGTGATGGGTCAGGTTCTGCCCCCCCTCCTGATGGAGGAACAGCTGATGATGCAACAGCAGCAGATGGAGGAGGACCAGCGGTGGCTGGAGCATGAGGAACGCTTCCTGAAGCCGGATTCAAGGAATTCCAGAGGCAGCATTGACCGGGACGACGGCATCCTCCATGGCCCAaCAGGAAACCAGCACATATACCAACCCATAGGCAAACCAGAACATGCATCTCCACCAAAGAAACCCCCCCGTCCTGGAGCCCCCAGTCACCTGGGTAGTCTGGCCAGCCTGAACCCCGTGGACAGCTACAATGAGGGAGTGAAGCCCTGGCGGCTCCAGCCTCAGGAGATCAGTCCACCCCCCACTGCCAACCTGGACCGCTCTAATGACAAGGTCTATGAGAACGTCACAGGACTGGTGAAGGCTGTCATAGAGATGTCCAGTAAAATTCAGCCTGCGCCTCCCGAGGAATACGTGCCAATGGTCAAGGATGTGGGTCTGGCACTGAGAACACTCCTGGCCACAGTGGATGAAACAATCACGTTACTTCCAGCTAGCACACACAGAGAGGTGGAGATGGCCCAGAAGCTGTTGAACTCTGACCTGGCGGAGCTGATCAACAAGATGAAGCTGGCCCAGCAGTATGTCATGACCAGCTTGCAGCAGGACTACAAGAAACAGATGCTGACGGCCGCCCACGCCCTGGCCGTAGACGCCAAGAACCTTCTAGACGTCATCGACCAGAGCCGGCTCAGGATGTTGGGCCAGGCCCGGCCGCCACCTCACTAGCGCTGTGGGAGGAGGGTGTGGAGTGTGGGATGAACTGACTCAACTCAAAGCTTCTGTCTGAATGACTGTCTGGACAGATGGAAGCCATGTGAAGGCAGCCTTGGGTTTGTTCACCTGTTCTGTCATGTCTAATCAGTGATTACTTCAAGGAAGGGAGGAATGAGGAAGATTTCACTGTGAAGGAATTTGAACGGGATACTGCTTCTACAGGACCATCATATGGACTGGACTCCATGTGCATCACCAGGCAGACTAGCGACCACCTCTGACCCTCACTCCCCAACACACCACTCCTTTTTATAGACTTGGAATCTTTGAAGAGTTATTTTATTTTAAGCTGCACCGATTGTGTCGGCTGACTAACTGTGAATTCCTACAGTCCCAGATTTCATCTGAAGAAGAATCAGGAGGCACACTTCAGAAACTGCTCCCCCCAAAGGACATATGGAGGATGATGTGGACAACACAACTGAACTGGAACCTCTCTGCTTTAGTAGACAGAACACTGAGCTCCTCACACTACGTCTAACATGTCTGCTTCATTGTTAACACTTGTCACAAGCTCAATAGTGATTCATTGAGGATCACAAACACTGGGATATATTTTGTCTTGGCTCAGTCGGCCATCTTGTCAAATAGGAGAAAATAAAGGATGAAATAAAATGATGACAAAAAGACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247385 lncRNA upstream 46703 3530097 ~ 3532067 (+) False LOC118936611
TU247386 lncRNA upstream 46703 3530097 ~ 3532067 (+) True LOC118936611
TU247387 lncRNA upstream 65795 3507709 ~ 3512975 (+) False LOC118936611
TU247359 lncRNA upstream 88087 3490374 ~ 3490683 (+) True LOC118944810
TU247323 lncRNA upstream 209873 3368331 ~ 3368897 (+) True G217081
TU247484 lncRNA downstream 3020 3710797 ~ 3711204 (+) False G217223
TU247485 lncRNA downstream 3020 3710797 ~ 3711204 (+) True G217223
TU247405 lncRNA downstream 42693 3750470 ~ 3754296 (+) True LOC110493965
TU247519 lncRNA downstream 92144 3799921 ~ 3802530 (+) True G217244
TU247824 lncRNA downstream 97034 3804811 ~ 3805064 (+) True G217521
XM_036965950.1 mRNA upstream 22503 3534519 ~ 3556267 (+) False LOC110520752
XM_036965955.1 mRNA upstream 22503 3534519 ~ 3556267 (+) False LOC110520752
XM_036965960.1 mRNA upstream 22503 3534519 ~ 3556267 (+) False LOC110520752
XM_036965932.1 mRNA upstream 45673 3511671 ~ 3533097 (+) False LOC118936611
XR_005040203.1 mRNA downstream 18177 3725954 ~ 3733696 (+) False LOC110507370
XM_036966094.1 mRNA downstream 18184 3725961 ~ 3733652 (+) False LOC110507370
XM_036966108.1 mRNA downstream 30558 3738335 ~ 3754295 (+) False LOC110493965
XM_036966105.1 mRNA downstream 31771 3739548 ~ 3754295 (+) False LOC110493965
XM_036966117.1 mRNA downstream 46889 3754666 ~ 3803724 (+) True LOC110493962
TU247379 other upstream 34292 3540799 ~ 3544478 (+) True LOC110520752
TU247383 other upstream 38864 3537839 ~ 3539906 (+) False LOC110520752
TU247382 other upstream 41511 3535177 ~ 3537259 (+) False LOC110520752
TU247395 other upstream 97234 3480316 ~ 3481536 (+) True G217146
TU246814 other upstream 470537 3106611 ~ 3108233 (+) False G216673
TU247417 other downstream 18753 3726530 ~ 3729156 (+) True LOC110507370
TU248166 other downstream 434866 4142643 ~ 4143089 (+) True G217809
TU248238 other downstream 589779 4297556 ~ 4302856 (+) False G217870
TU248288 other downstream 743977 4451754 ~ 4452556 (+) True G217896
TU248792 other downstream 1229320 4937097 ~ 4939894 (+) True G218309

Expression Profile