RNA id: XM_036966054.1


Basic Information

Item Value
RNA id XM_036966054.1
length 2073
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC110507312
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3621822 ~ 3625100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAGCAGCCAATCACATAATCCGTTGTTCACTTCTGTTCCAGTACAGTAAGTTCCAACACACACCCTTATCTCTGCAAACatctgcatcacacacacacacacacacagtcaggcaggcaacagagacagagagcaacacagagagaaggaaaacACTAAAGATACATAGGTGGGttaaagaagaaacaacaacaacgaaGATTAAGCTGGAACAATGGAGATGTGTAGTAGCGTGGTGTTGGGAGGCCTGGTGTTGTTGCTTCTACTGTGGTTGTTCAggctgaggagacagagacatgtcCATCTACCCCCAGGACCCTGCGCCCTGCCGCTTCTAGGAAACCTGCTTCAGATTGACAAACAGGCCCCCTTCAAGACCCTCACCAAGTGGAGTGGTGTGTATGGGCCAGTGATGACAGTGTATCTTGGGTCCCAGCGAGCCGTGGTGCTGGTGGGGTACGGGGCAGTCAAGGAGGCTCTGGTGGACCAGGCTGAGGATTTCACAGGACGAGCTCCTGTCCCCTTCCTGGTCcttgttaccaggggatacggccTGGCCATCAGTAATGGGGAGCGTTGGCGCCAGCTGCGTCGTTTCACCCTGACCACACTGAGAGACTTTGGGATGGGCCGTAAGAGGATGGAGGAGTGGGTACAGGAGGAGAGCCAACACCTCATAGACAGTCTGGACGCCACTAAAGCCGTGCCCTTCGATCCTCATCCATTCCTGAGTCGCACCGTGTCCAACGTCATCTGCTCCCTGGTGTTTGGCCAGCGCTTCGGCTATGACGATGACAACTTCTTGCACTTGCTCAACATCATCTCAGCTGTACTGCGCTTTGGAAGCAGCCCCTGTGGACAGCTGTACAACATCTTCCCCTGGCTGATGGAACACCTGCCTGGTCGGCAGCAAGTTGTGTTCGGCCAGATGGACGAGTTGAGAGGCTTTGTGATGAAAAAGATCCACGAGCACCAGGAGACCATTGACCCAGGCAACCCTAGAGACTTCACAGACTGCTTCCTCACCAGACTCAACCAGGAGAAGGATGTGTCCTCCTCTGAGTTCCATTACGAGAACCTGGTGTCCACAGTGTTGGACCTCTTCCTTGCAGGAACAGAGACCACCAGCACCACTCTCAGATATGCCTTCATGCTGCTCCTCAAATACCCCAACATTCAGGAGCACGTTCAGCAGGAGATCGACACAGTGATTGGCCGACAGCGCGTCCCTCAGATGGAGGACAGGAAGTCCCTCCCCTTCACAGAAGCCGTCATCCACGAGGTGCAGCGCTTCCTGGACATCGCCCCATTGAACCTCCCGCACTATGCCACCAAGAATATCTCATTCAGAGGGTACACTATCCCTCAGGGCACCGTGATCCTTCCGATGCTGCACTCTGTTCTGAGAGACCAGGACCACTGGGCCACGCCCACAACCTTCAATCCCAATCACTTCCTTGATCAGAACGGAAACTTTCAGAAGAACCCCGCCTTCTTGGCTTTCTCTGCAGGTAAGCGTGCCTGTGTGGGAGAGTCTCTGGCTCGTATGGAAATCTTTCTGTTCCTGGTGTCTCTGCTGCAACATTTCTCCTTCTCCTGCCCTGGAGGACCTGACAGCATTGACCTCAGCCCAGAGTTCAGCAGTTTCACTAACGTGCCGCGTCACTACCAGCTCATCGCTACACCCCGCTGACCAGGAGGGGAATTGCAGCCGGACCACAGGAGGAGTAGAGatgagggaggtagggacagcacaggaggttggttccCATATGTCTGATGCCATTTCATAAGcttgttccagccattattattatgagccgttctcccctcagcagcctccactgagggACGGGTgtctatttttttgtttgtttttcatgaCAATGTGATGCGTTGTGATACTTTGTGATGTGTGTTCTTTAACAACGAATGCTTGGAGATTTTTCTGGTCAGTATAGGTGGATCAGGAGAAACTCAGGGTCCTGGGAGTGAAGTCctctttgtcctcgtcttgtcgtgtcccgtgtatatatatatttatatattttcttcgcatttctttatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247677 lncRNA downstream 74856 3545980 ~ 3546966 (-) True G217387
TU247662 lncRNA downstream 89614 3529588 ~ 3532208 (-) True G217374
TU247629 lncRNA downstream 130969 3489028 ~ 3490853 (-) True G217348
TU247630 lncRNA downstream 137723 3481670 ~ 3484099 (-) True G217349
TU247625 lncRNA downstream 146212 3474086 ~ 3475610 (-) True G217344
TU247736 lncRNA upstream 11816 3636916 ~ 3644304 (-) True G217439
TU247770 lncRNA upstream 81854 3706954 ~ 3707763 (-) True G217469
TU247843 lncRNA upstream 212030 3837130 ~ 3837331 (-) True G217539
TU247850 lncRNA upstream 218995 3844095 ~ 3844517 (-) True G217543
TU247982 lncRNA upstream 254049 3879149 ~ 3879388 (-) True G217652
XR_005040124.1 mRNA downstream 383803 3237475 ~ 3238019 (-) True LOC118944808
XM_021586699.2 mRNA downstream 458899 3152009 ~ 3162923 (-) False LOC110506836
XM_036965874.1 mRNA downstream 501711 3106571 ~ 3120111 (-) True LOC118936609
XM_036975426.1 mRNA downstream 515582 3099268 ~ 3106240 (-) False LOC110506763
XM_036965873.1 mRNA downstream 523663 3091532 ~ 3098159 (-) True LOC110520730
XM_021587285.2 mRNA upstream 94600 3719700 ~ 3725689 (-) False LOC110507329
XM_021587252.2 mRNA upstream 94600 3719700 ~ 3725695 (-) False LOC110507329
XM_021587267.2 mRNA upstream 94600 3719700 ~ 3725695 (-) False LOC110507329
XM_021587276.2 mRNA upstream 94600 3719700 ~ 3725695 (-) True LOC110507329
XM_036966137.1 mRNA upstream 367914 3993014 ~ 3998119 (-) True LOC110506742
TU247540 other downstream 283242 3338186 ~ 3338580 (-) True G217261
TU247125 other downstream 562078 3046005 ~ 3059744 (-) True G216902
TU246996 other downstream 883355 2736861 ~ 2738467 (-) True G216811
TU246045 other downstream 1496470 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 1499965 2121203 ~ 2121857 (-) True G216066
TU247757 other upstream 61302 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 813996 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 813996 4439096 ~ 4440437 (-) True G218073
TU249887 other upstream 913562 4538662 ~ 4540441 (-) True LOC118944829
TU249925 other upstream 1018870 4643970 ~ 4648803 (-) True LOC118944839

Expression Profile