RNA id: XM_021587285.2


Basic Information

Item Value
RNA id XM_021587285.2
length 2660
RNA type mRNA
GC content 0.43
exon number 16
gene id LOC110507329
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3719700 ~ 3725695 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCTGCCTGGATACAGTTCTGGGTTAGAAGATACGGAGCGGCATGATGCGCCTGATTTGATAAATTGTATATTTTCTGATATCATTGACGCACTTTTGTGGTCCTATACTCCTAGCTTTAGCTGTCAATGTCCACCATTCGTTTTGgtcgttttttatttttacatttcatACCAGTATGTTCCCTTCGTGCTATTCAAAGCCGACGAGTTCAAAGGACCTATTCAAAAGGACTTATCTGACAAAGATTTTACTAGGAGTGTTCGTCGTGTATATGTCACACACCTGCTGGGTGATTTATGGCTTTGTGTACACCAAGCCTTGTGAGAGAGGTAAAGGAGACTGCATTTCTTCCTATCTTGCAGAAAGACCTCGTCTCCAGGGTGGTGAATGTATCCCTGCCGTTGGCAACACGTAACAACGGGACTCTGCACACATTGGTTTATGTACACAAGTTTGGAGTGTCTCCCTTGCAGGATAACCGGCAGGTACATCATGTTGCCCAGCTCAGCACCTACATGATGTCCCGAAAAAATGTCAGCTCTGCTAAAGAGGTCCTCAAAAAACATGCTGCCACTGCTCCTCGAGTAGTAGACAGACCCATCTCTCACTGGAGGTCCCGTCTAACCCTAAACATGATGTCAGAGGACTTCACCTTCAACAGAGGGACCTTGCCAAGTGATGTCCGGCGCTACATGAGAGTATATTTTGTCTCGTGTTTTAGATTTCAGGATGAGAACAGGATGGTATATCTGCCACTTTTACATATTGATGAACTCAGCGTCAGGGTAAAGGACATGATGGAGATTAACGGCTCCACAACCAAACTACCTCTTACAATATCCTACGAAGGCCTATCGCTGAGGCAATTCCGTCTCTGGATCCACATGCAGGATGTAATGTTTTCACTGAAACATTTTGGGTTCACTGAGGTGAATATAGATGAAATCAAAGGTGTTCTTGTGGACAACAACTTGTACCTGTTAGCATTGACTACCTTGGTGACCGCATTCCATTTCATATTTGAATTCCTGGCCTTTAAAAATGACATAAGcttttggaggaagaagaaaaacATGGTGGGCATGTCTCGTAAAACAgTGCTGTGGAGATGCTTTAGCACCATAGTGATTCTcctgaaaatgctggaggaacaAAGCAGCTTGCTAGGTCTCATTCCTGTTGGAATAGGAACCACAATTGAGGTGTGGAAGGTGAAAAAGGTCTCCAAAATACAGCTACAGTGGAGAACCTCTAGGTCTATAGTTCATGTTGGTAAATTTGatgagtcagagagaaagactaTACAACATGACACACAGGCAATGAAATGCCTGTCTTATTTAGTGTACCCTCTGTCTATTAGTGGAGCCATCTTCTCTCTGGTATACCTGAGGTATAAAAACTACTATTCATGGTTAATCAACAGCCTTGTCAGTGGGATTTATGCTTTTGGATTCCTCTCTATGGCTCCTCAGCTGTTCATTAACTTCAAGTTGAAGTCCGTGGGCCATTTGCAATGGAACGTATTGATGTATAAAGCAGTCAATACATTCGTCAACGATGCCTTTGCCTGTGTCTTCAGCACACACCCATCCCACCAGCTGGGCTGCTTCAGGGATGAGATTATGTTTATCCTCTACCTTTACCAGAGGAGGCTTTACTCTACAAACAAGACCAGATGTCGTGAGTATGGATCATGCCACCACAACCACAGGAAACTCAAAGCCCAATGATGACTGAGGTCATCACCAGAAAACATGGTTGAATGAAGGAAACATACCTGCACATGGTGGGGTTGTAAACAGCATGGGAGGCTCTCTGAGGGTGCATCAGGGTTTATTTGAAGCCTTTAGTAAAGTTCAGAATTAGTTTTGTAAGTAGAGAATACAGCTTATTTTCAGTCAACCCTGTGTTAACCACTGATATTTCCATGTGTTAGAAGTTTGACCAACCCGTATGTAGCCAACAGAAGCATGAACCGTTTTTTAGTGATacatattgattactgcattgttaggtTTGAGGCTAGCAATAAAGGCATTTTACTGTACTTGTGGACATGACATTAACACTTGAAAAAGGAGGCTGCCCCTCGCCCTGCCTGCACTGCTCCATGTTACCAGATATAACCAGTATGTAGCCTACTGAAGCATAAAGCTGCCCCTTGCCCTGCCTGTACTGCTCCATATAGTCCACAAGGAGGCAGTGTTGTCAGCCCCTTGCTGTACTGTTTTCTGCTTGTTCTTTCAGTcctctacttcctgtttgagAATAGTACATGTATAGATGGGTGCTAAAGGGGAGGAATGAGAAACATGTACAAAAGATGGAGTAACGTGAAGTACAGTGAACTCCTGATAAATCCAATGTCTTTAGACAGTCATATGTGAGAGCTAACCGGAACATGCACATAACCTGTATCTATCCAGGCTGTATTTGAAATGGGACGATTGAGCTACAATGCACTAATGAGGTTTTTTGCACTTTGCATACAATGCGCACTTATCAGGAATCAACTGTACTTTTAAATAATGAAGATACTGTAAGGTCTTTAAAAATTAAGTAGGAAGCGTAGCCTGATGTTTTTGAATCACATCCTTCTACCAGGGTTTATGGAATGACTTTCCTCTTTGATTAAATTATTACAATTAAATGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247770 lncRNA downstream 11937 3706954 ~ 3707763 (-) True G217469
TU247736 lncRNA downstream 75396 3636916 ~ 3644304 (-) True G217439
TU247677 lncRNA downstream 172734 3545980 ~ 3546966 (-) True G217387
TU247662 lncRNA downstream 187492 3529588 ~ 3532208 (-) True G217374
TU247629 lncRNA downstream 228847 3489028 ~ 3490853 (-) True G217348
TU247843 lncRNA upstream 111441 3837130 ~ 3837331 (-) True G217539
TU247850 lncRNA upstream 118406 3844095 ~ 3844517 (-) True G217543
TU247982 lncRNA upstream 153460 3879149 ~ 3879388 (-) True G217652
TU247984 lncRNA upstream 160040 3885729 ~ 3886023 (-) True G217654
TU248003 lncRNA upstream 184256 3909945 ~ 4025905 (-) False G217662
XM_036966054.1 mRNA downstream 94600 3621822 ~ 3625100 (-) False LOC110507312
XM_036966049.1 mRNA downstream 94607 3621822 ~ 3625093 (-) False LOC110507312
XM_036966041.1 mRNA downstream 94617 3621824 ~ 3625083 (-) True LOC110507312
XR_005040124.1 mRNA downstream 481681 3237475 ~ 3238019 (-) True LOC118944808
XM_021586699.2 mRNA downstream 556777 3152009 ~ 3162923 (-) False LOC110506836
XM_036966137.1 mRNA upstream 267325 3993014 ~ 3998119 (-) True LOC110506742
XM_036966141.1 mRNA upstream 303403 4029092 ~ 4039160 (-) True LOC110506736
XM_036966148.1 mRNA upstream 409617 4135306 ~ 4354125 (-) False LOC110505077
XM_036966144.1 mRNA upstream 409617 4135306 ~ 4354126 (-) False LOC110505077
XM_036966152.1 mRNA upstream 517959 4243648 ~ 4354126 (-) True LOC110505077
TU247757 other downstream 30396 3686402 ~ 3689304 (-) True G217459
TU247540 other downstream 381120 3338186 ~ 3338580 (-) True G217261
TU247125 other downstream 659956 3046005 ~ 3059744 (-) True G216902
TU246996 other downstream 981233 2736861 ~ 2738467 (-) True G216811
TU246045 other downstream 1594348 2124176 ~ 2125352 (-) True G216059
TU248501 other upstream 713407 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 713407 4439096 ~ 4440437 (-) True G218073
TU249887 other upstream 812973 4538662 ~ 4540441 (-) True LOC118944829
TU249925 other upstream 918281 4643970 ~ 4648803 (-) True LOC118944839
TU250017 other upstream 1044661 4770350 ~ 4772051 (-) False G219200

Expression Profile