RNA id: XM_036966094.1


Basic Information

Item Value
RNA id XM_036966094.1
length 2301
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110507370
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3725954 ~ 3733696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCGAGTTCAGGGTCATGCACGAGCACGTGTTACTGTAACACCAAAACACCCCAATGCCTGCTGGTTGTAGTTGCTCTGAGCCAGCTGTCCCTGTGTTTAGGAGGAATAACGTATCTTGGATTTAGCAATACCAGATGCAagcctattgttattttactcaCATATGGCACTTTTTTGCGACAGGTTGAGAAGTTCGTTCGGGAAGCACGAGCTAGTCTCCTGCTAGCGGCATATAAGTTTGTTCGCTAACGTTAGCAGTTAGCTAACTTACTAGCTAGCGCCTTGTTTGCGTGCTAACTAGCTAaataaaggggatacctagttagtTTTACAACTgcatgcattcaactgaaatgtgtcttctgaatttaacccaacccctctgaatcaaagaggggctgccttaatcgacatctacgtcttcggcgcccgggaaacagtgggttaactgccttgctcaggggcagaacgacagctttttgtcagctcggggatttgatccagcattTTACCCGACTTTGGACTGAAACGGTTGTATGATTTTGCAGAACAGTGCTGATAAGTTTACTAGCTACCTAGCCTACGTTAGTGATTCTGTTCCGGGTGCAAGTGGAATAACCAGTAATGCAACTGATCAGCTGGCTAGACCAACAAAGTTGCTAAATAACTAAGGACACTTTGCTAAAATGCAGTGGTGCTGAACAAAGCAATGGAAGCTTGTTTCAAGTCGTTCACCATGGGTGGTCTTCGGAGATCTCTGGACATTAAATTCAGGGTCCTCGCCGGCTTTTTGACCTGCAGAACAGTGAGTTGTTCCAGATCACCTATAAAATGCCAACTCTCCAAGCATCAGCCGGTGACGAGGGGGAAAGCAACACTGTTGCGATCATGTCCGTCTGCATATTTCATTCGCCATAGAGGAACTGAGGCATCCCTCTCCAGTGTGGCTCCTGCTTTTGTTATGATGAAATTTGACAAAGATGGAAATGTAACCACATTTGagaagaagaagatggagCTGTATCATGAGCTGAGTCTGCAGGCCAGAGACCTCAGGTTCCAACACCTCACCAGCATCACCGCTAggaacaacaacatcatcattcGCATGGAGGCCTTGAAGGCAGTAGTGACCCCCAATAGCCTGTTGGTGTTGGATTTCCGAGGTCTGGGATTGGAGAGATGGCTGGTCCTGGAGTTGGCTCCACAGTTGAATGGGGACCATGGAGCTCTGGCCACTCATTCACTGCCATTTGAGTTCAGAGCCCTTGAAGCTATTCTGCAGCACAGGGTAAACACCCTTCAGGCTCGACTGAATGAGGTTCACCCTGTCATCCTGGACATTCTAGAGTCACTTGTGGATCCTAAACTACTCTCTGCAGATCGCAGCAAACTGCATATACTTCTTCAGAACAGCAAGAACCTGTCAGAGCTGGAGACAGACATCAAGGTCTTCAAGGACAGTCTGCTGAAGATCCTAGACGAAGAGGAGATGATCGAGGAGCTTTGTGTCACCAAGTGGACAGATCCACGTGTGTTTGAGGAGAGCAGTCTGGGCATTGATCATGCTGAGGAGATGGAGCTTCTCCTGGAGAACTACTTCATGCAGGCTGAGGAGCTGGGCAACACGACCAGGGAGCTCAAGGGCCTGATAGACGACTCCGAGAGTGTTATCTTCATCAACCTGGACAGTCACCGGAACGTGATGATGCGTCTGAACCTGCAGCTCACCATGGGGACCTTCTCACTCTCCCTATTTGGCCTGATGGGCGTCGCCTTCGGGATGAACTTGGAATCCACGTTTGAGGAGGACCCCAAGGTGTTCTGGCTGGTGACAGGCTTCATGTTCCTGGGTAGTGGACTAATCTGGAGGAGACTGCTCTCGTTCCTGGGTCGACACCTTGAGCCTACCGTCCCCCCACAGATCCCAACAGTTTGGAAGAGAAACCAAATCAACTCAAaaggaggagaggtgaagagtggACTAAGATGATAGTTCCTTGTTGCACCACCTCTCTGCTGAGGAATCTGAACTGTTTGACTGTTTTCATAATACAGTGAGATTTTCCACTCGTTTATTGCAgaggaatgttttttttctcttcataATCTCAATATTAGTTTTTTTGCAATTGGTTTAAGACTGTTGTAAGCAGTGTTAATATATTTATTAACATCCTGGATATATTGTTATAATGAAGAACACTGTATACCTCCATCTGTATTCAAGGATACTGCACCAATTCTTACTGTCCAAAAACATGGTCCCACTGTTCACCAAAACCACTGTTCAAATAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247484 lncRNA upstream 14757 3710797 ~ 3711204 (+) False G217223
TU247485 lncRNA upstream 14757 3710797 ~ 3711204 (+) True G217223
TU247479 lncRNA upstream 37865 3686596 ~ 3688096 (+) True G217220
TU247385 lncRNA upstream 193894 3530097 ~ 3532067 (+) False LOC118936611
TU247405 lncRNA downstream 16818 3750470 ~ 3754296 (+) True LOC110493965
TU247519 lncRNA downstream 66269 3799921 ~ 3802530 (+) True G217244
TU247824 lncRNA downstream 71159 3804811 ~ 3805064 (+) True G217521
TU247853 lncRNA downstream 113099 3846751 ~ 3846981 (+) True G217546
TU247859 lncRNA downstream 117166 3850818 ~ 3851040 (+) True G217552
XM_036966009.1 mRNA upstream 18184 3578987 ~ 3707777 (+) False LOC110520760
XM_036966108.1 mRNA downstream 4683 3738335 ~ 3754295 (+) False LOC110493965
XM_036966105.1 mRNA downstream 5896 3739548 ~ 3754295 (+) False LOC110493965
XM_036966117.1 mRNA downstream 21014 3754666 ~ 3803724 (+) True LOC110493962
XM_036966123.1 mRNA downstream 120795 3854447 ~ 3874865 (+) True LOC110507394
LOC118964350 mRNA downstream 164574 3898226 ~ 3910037 (+) True LOC118964350
TU247379 other upstream 181483 3540799 ~ 3544478 (+) True LOC110520752
TU247383 other upstream 186055 3537839 ~ 3539906 (+) False LOC110520752
TU247382 other upstream 188702 3535177 ~ 3537259 (+) False LOC110520752
TU247395 other upstream 244425 3480316 ~ 3481536 (+) True G217146
TU246814 other upstream 617728 3106611 ~ 3108233 (+) False G216673
TU248166 other downstream 408991 4142643 ~ 4143089 (+) True G217809
TU248238 other downstream 563904 4297556 ~ 4302856 (+) False G217870
TU248288 other downstream 718102 4451754 ~ 4452556 (+) True G217896
TU248792 other downstream 1203445 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 1211351 4945003 ~ 4961450 (+) True G218293

Expression Profile