RNA id: XM_036966117.1


Basic Information

Item Value
RNA id XM_036966117.1
length 1959
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110493962
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3754666 ~ 3803724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAAATGGAATTGTCAACGAACGTGAAAACGCATGGCTGTCCCTACTGCTTTGCCGTAGTCATTCATCGCGGAAGTTATTTTGAAATTGATAAGAAATAGCTAGTTGGCTAGAAGGAATAACATTTATTGTGAATTATTCCATCTGTCAAGACGGTCAGCAATTTACCAACTAACTGTAGAAGAAGATGCAGGGCCGGCAGATAAAACAATGTGGCCTTTCCTCACTGACTCTTTTGGTCACATTTCTCCATTGTAACTGTTTGCCACACAGTACTGGTGGAAAGCCATTTCCAGAGACCGCTAAAGAAATTGCCAGCTATGCAAAGGTAGCCAAGAGCATCATAGACTTGGCTGTGTATGGCAAAGCCCAGAACCGCTCCTATGAGAGACTGGCAGACTTCACAGATACAATAGGGAACCGTGTCAGTGGCTCTAAGAACCTGGACCTGGCTATCAAGTACATGTTCAGTGCCCTGAGGAAGGATGGGCTGGAGAACGTACATCTAGAACCAGTGAAGATCCCACACTGGGTCAGGGGAGAGGAAAGCGCCGTGATGCTACAGCCCCGGAACCACACCATGGCCATCCTTGGACTGGGCAGCAGTGTGGCTACACCCCAAGGAGGCATTGAAGCAGAGGTGCTGGTGGTGGAGTCTTTTGAGGAGCTGAAAAAAAGGCAGAAGGAAGCCATTGGGAAGATTGTGGTGTATAACCAGCCCTTTGTCAGCTATGGGGAGACTGTGCAGTACAGGGAGTTTGGGGCATCCAAGGCAGCTGAAGTAGGAGCTGTGGCTACTCTCATCCGGTCCATCACACCCTTCTCCATCAACAGTCCTCACACAGGCTGGCAGGACTACCAGGAGGGAGTGCAGAAGATccctaccgcctgtatcacagtGGAAGACGCCATGATGATGGCCAGGATGGCTAAGCGAGGCCAGAGGATTGTGGTCCGACTCACCATGAACGCCCAGACCTTCCCTGATGCTGACTCCTTCAACACTGTGGCTGAGATCATCGGCAGCGAGCACCCAGAACAGGTGGTGCTGCTCAGTGGTCATCTGGACAGCTGGGATGTGGGCCAGGGGGCCATGGATGATGGTGGTGGAGCGCTCATCTCCTGGGAGGCCTTGTCTCTGCTTAAAGACCTGGGTCTGCGTCCCAGAAGAACCCTCCGGACAGTGCTGTGGTCtgcagaggagcagggaggggttGGAGCGCAACAGTACTTCCAGCTTCACAAGGTGAACATCTCTAACTTTAACCTAGTGATGGAGTCTGACCAGGGTACCTTCACCCCCCTGGGACTGCAGTTCACAGGCTCAGTCCAGGCCCGGGCTGTCATGGCTGAGGTGATGAAGCTACTGAAgcccatcaacaccaccaccctggAGGAACACGGAGAGGGAATTGATATAGAGATGTGGATGGATGCTGGCGTGCCAGGAGCCAGCCTGCACGTTGCAGACAGTAGATACTTCTGGTTCCACCACACCAACGGAGACACCATGTCTGTTCAGAGCCCCATAGAAATGAACCTGTGTTCGGCCCTGTGGGCGGTGGTGGCCTACGTAGTGGCTGACCTGGAGGAGATGCTGCCCAGGTAGTCCACTAGGACTGTCCTGCATCCTAAACGGCACCCTATCCCCTGTATAGTTTTGGGAGAAGAATATGGAGAATATGGTGCCATAAAAATGCTTTACTGTTGTTTGTCCTCCAGAAGGGCTTCCTGCAGTAACCTCTGTGAAATTATACCCCACTCTGGTTAAGTGGCTAAAGAAGAATTAATAGTGTGTATAAACCACACAATGTACAAAATGGAATTAAGTATTTTTGGCATATTATTTCCAGTCAATTTCTTTTATAATGAACACATATGTACTGCATGTTTCATGTTGACTGTCATTATGTCTAATCTGCCAATAAAGCTGGTCATTAATTAGACCAAGGTGCACGT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004180 carboxypeptidase activity molecular_function

KEGG:

id description
K01302 CPQ; carboxypeptidase Q

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247405 lncRNA upstream 370 3750470 ~ 3754296 (+) True LOC110493965
TU247484 lncRNA upstream 43462 3710797 ~ 3711204 (+) False G217223
TU247485 lncRNA upstream 43462 3710797 ~ 3711204 (+) True G217223
TU247479 lncRNA upstream 66570 3686596 ~ 3688096 (+) True G217220
TU247385 lncRNA upstream 222599 3530097 ~ 3532067 (+) False LOC118936611
TU247824 lncRNA downstream 1087 3804811 ~ 3805064 (+) True G217521
TU247853 lncRNA downstream 43027 3846751 ~ 3846981 (+) True G217546
TU247859 lncRNA downstream 47094 3850818 ~ 3851040 (+) True G217552
TU247862 lncRNA downstream 71219 3874943 ~ 3875184 (+) True G217554
TU247884 lncRNA downstream 72175 3875899 ~ 3876116 (+) True G217568
XM_036966108.1 mRNA upstream 371 3738335 ~ 3754295 (+) False LOC110493965
XM_036966105.1 mRNA upstream 371 3739548 ~ 3754295 (+) False LOC110493965
XR_005040203.1 mRNA upstream 20970 3725954 ~ 3733696 (+) False LOC110507370
XM_036966094.1 mRNA upstream 21014 3725961 ~ 3733652 (+) False LOC110507370
XM_036966013.1 mRNA upstream 46889 3578987 ~ 3707777 (+) False LOC110520760
XM_036966123.1 mRNA downstream 50723 3854447 ~ 3874865 (+) True LOC110507394
LOC118964350 mRNA downstream 94502 3898226 ~ 3910037 (+) True LOC118964350
XM_036966134.1 mRNA downstream 113267 3916991 ~ 3924440 (+) True LOC118944821
XM_036966131.1 mRNA downstream 161734 3965458 ~ 3968265 (+) True LOC110520766
XM_036964020.1 mRNA downstream 219251 4022975 ~ 4025061 (+) True LOC110506729
TU247417 other upstream 25510 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 210188 3540799 ~ 3544478 (+) True LOC110520752
TU247383 other upstream 214760 3537839 ~ 3539906 (+) False LOC110520752
TU247382 other upstream 217407 3535177 ~ 3537259 (+) False LOC110520752
TU247395 other upstream 273130 3480316 ~ 3481536 (+) True G217146
TU248166 other downstream 338919 4142643 ~ 4143089 (+) True G217809
TU248238 other downstream 493832 4297556 ~ 4302856 (+) False G217870
TU248288 other downstream 648030 4451754 ~ 4452556 (+) True G217896
TU248792 other downstream 1133373 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 1141279 4945003 ~ 4961450 (+) True G218293

Expression Profile