RNA id: XM_036966131.1



Basic Information


Item Value
RNA id XM_036966131.1
length 1248
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110520766
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3965458 ~ 3968265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGTATAAATGCAGTTCTTAGAGGAAGCAGTAGACTAGAAGGAcctggcagagacagagagacaataaGCTTTCACAGGGTTTCACACATCTCAAGATAGCACTGTGGGAAACactgacctgacagAATGTTCTTAATCCTGGTTGTCACAATGTTCTTGGCTGGCTGCTTGGCTTTGCCCATCAAAGACCCGTACTCGTATTCCTCTGCGGTGGGTCAGGGAGGTGGCACCCCATTTGCTTCCTACGGTGAGGGGCGCATCACAGCGGTCAGAGTGTGGGAGaccaacaacaactactactactactactactactacaactacaacagCAACAATTACATCAGCGGGTTCCAGCTGAGATACGGCAACACCTGGTCTCCTGTGTTCGGTAACGAAGGGAGTGTAAAGCAGGTGATGGAGCTGTTTAATGATGAGGCCATTGTCGAGGTGTCTGGGAAGTACAACCCAGCAGACTACATCTGCTCCCTGGTGTTAACCACCAACATGGGGCGCACTCTGTCAGCCGGCATGCCCAACCAGGTCTCCTTCAACTTCTACCCATCCAACATGGGCAATGAGCTGAGGATCCTCAGCGGTCGCTTCAACGGTGTTGGAATCACCTCCATCGGAGCCCACTGGGGATTTGTGGACATGGAAGGGGCTGGAAACAGTACTCTGGGAACAGCACTGGAAACAGTAACTCCTGTTTTTTAGGGGGAaaaatgctttttagtccaggagtaAACTTAATCTGGGTCCAGGAAACTGACCTTATATGATGGACGGATGTTTGACATAGACGCTGACAGAACAGTTTTTATTTCACTATCTGTttgttatttcacttttatttcacTGATTGAATTTGAATGTTTTGAGTACTTTGGAAGTACTTTTGAGGTGATTCCTCACTTGAAGCAGTAATAAAATATTTCTTAACATTCAAATTCATTCAGTTCAAATTCTCATGAAGCATCCATTAGATAGGAATATTCAAACAGTCCTGTCAGCTTGGATCAACATGCGTTGTTATCACATTTTATCACAATAAAGGAAAGAATCATATGGGATTTAAAGGATTAATTATATCTTTGATTAATTGAACAATCAAATATTATGGGGAGATAATAGTGTTTCAGGGTGTTTCACCTTCACTATTTTATACACGCTGCTTTTGTTATTTGTTGATCCTTTTCTGCTACATCTGCTTCTGGACATTTTAATAAAAAGCATATCTTTAATCATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU247934 lncRNA upstream 5916 3958720 ~ 3959542 (+) True G217609
TU247888 lncRNA upstream 77758 3887484 ~ 3887700 (+) True G217572
TU247886 lncRNA upstream 79411 3885820 ~ 3886047 (+) True G217570
TU247885 lncRNA upstream 88679 3876550 ~ 3876779 (+) True G217569
TU247884 lncRNA upstream 89342 3875899 ~ 3876116 (+) True G217568
TU247945 lncRNA downstream 21071 3989336 ~ 3992796 (+) True G217619
TU248081 lncRNA downstream 89819 4058084 ~ 4058476 (+) True G217732
TU248091 lncRNA downstream 99994 4068259 ~ 4068489 (+) True G217742
TU248111 lncRNA downstream 122082 4090347 ~ 4091041 (+) True G217761
TU248122 lncRNA downstream 130063 4098328 ~ 4098646 (+) True G217769
XM_036966134.1 mRNA upstream 41018 3916991 ~ 3924440 (+) True LOC118944821
LOC118964350 mRNA upstream 55421 3898226 ~ 3910037 (+) True LOC118964350
XM_036966123.1 mRNA upstream 90593 3854447 ~ 3874865 (+) True LOC110507394
XM_036966117.1 mRNA upstream 161734 3754666 ~ 3803724 (+) True LOC110493962
XM_036966108.1 mRNA upstream 211163 3738335 ~ 3754295 (+) False LOC110493965
XM_036964020.1 mRNA downstream 54710 4022975 ~ 4025061 (+) True LOC110506729
XM_036966163.1 mRNA downstream 128484 4096749 ~ 4135152 (+) False LOC110512888
XM_036966171.1 mRNA downstream 128523 4096788 ~ 4135152 (+) False LOC110512888
XM_036966188.1 mRNA downstream 128605 4096870 ~ 4135152 (+) False LOC110512888
XM_036966197.1 mRNA downstream 144536 4112801 ~ 4135152 (+) False LOC110512888
TU247417 other upstream 236302 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 420980 3540799 ~ 3544478 (+) True LOC110520752
TU247383 other upstream 425552 3537839 ~ 3539906 (+) False LOC110520752
TU247382 other upstream 428199 3535177 ~ 3537259 (+) False LOC110520752
TU247395 other upstream 483922 3480316 ~ 3481536 (+) True G217146
TU248166 other downstream 174378 4142643 ~ 4143089 (+) True G217809
TU248238 other downstream 329291 4297556 ~ 4302856 (+) False G217870
TU248288 other downstream 483489 4451754 ~ 4452556 (+) True G217896
TU248792 other downstream 968832 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 976738 4945003 ~ 4961450 (+) True G218293

Expression Profile