RNA id: XM_036966148.1


Basic Information

Item Value
RNA id XM_036966148.1
length 4116
RNA type mRNA
GC content 0.52
exon number 37
gene id LOC110505077
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4135306 ~ 4354126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGTGATATCCGGTAACAAACTTCGCGCTTTGAGTTTGAGTTGAAGGGGGGATTTGAAGGAAGTGACCAACCACTCTCCCTAACTTGAGAATCTTCTGTGCAGATGGAAAACTTCATCCTGTATGAGGAAATTGGAACAGGACGCAAGTCAGTGGTTTATAaggggagaaggaaagggagcATCAATTTTGTTGCAATTATTTGTAGTGACAAGTCAAAAAGACATGAAATTACTAACCACGTACGGCTAACTCATGACATTAAACATGAGAATGTGGTAACCTTCTATGAGTGGTATGAAACCAGCAACCATCTTTGGCTTGTAGTGGAACTGTGCACAGGGGGTTCACTGGAGTCAGTCATCACCCAGGATGAGTGCCTGTCAGAAGATGTAGTGAGGGAATTTGCCATCGATCTGGTCAAAGGCTTGAGATACATCCATGATGCTGGTATCGTGTTCTCTGACCTCACTCCCTCCAAGATCTTGTTGGATGGCCCTGGCACTTTGAAGTACTCTAACTTCTGCCTGTCTAAAGCTGAGGGGGAGAATCTGGAGGAGTTTTTTGCTTTAGTCACAGCAGACGAAACAGGTGGAGGGGATGGCAAAGAAAACACATCAAGAAGAAATATCAAGAGCAGAATCCAAGGGTCTCCAATATACTGTGCACCAGAGGTGGTCAAAGGGGGGGACCACAGTATCAGTAGTGATCTGTGGGCCCTGGGCTGTATATTCTATGAGATGTTTTCAGGAAAACCACCATTCTTCTCCGAGACGTTTTCTGAGTTGATTGAGCTGATATTACTTCAGGATCCTCCATCTCCAAGGCAAACGGGGGCTTCTTCCTGCAAGCCTACACAAGAGTTCCAAAGCCTGCTTAAAGGTTTGCTTCAGAAAGACCCTCAGAAGAGGATAAACTGgactcagttactggtccaccCATTCTGGAGAGGAGTGTTCTCTGAGGTCCACaccagcgaggaggaggaggaggaagaagaagatgtCTCATTCAGCTCCAGTGTGGGGAGGAGTGGTGTCTGTGCCTCTAGCCAGTCATCAGCAGTGACACCTGTCTCAGTGACCTCCCAGGGACCAGGAGGGGGATACAGAGGGGTACAGGGAGGGGCCGCAGGGGCAGAGGAGCCCGTCCGCATGCACCCCAACAAATCATTCCGATTAGACAAAATGACAGAGCTTAGACCAAAGAGTGCACTGGACAAAGATACCAGGGAGTCCATATTCCTCCTCAGCTCTCGTCCAACTCCAAGAATGAGTTGCACTGCAAGAGATCCACCCAACAGGACACCATTACCTCAAGACAGTGTGGTGGCCAGTGGTCTGAATGACATCAGTTACTGTATAAAGGACCTGGTGTACACTGACTCTGACCTGGCAGTAACACCTATTATGGACAACCCAAAGATTCTGAAGACCGCTCCAGTGCGATATGACCTGAAGACTTTGTGTGTCCGAGCATACTCAGTGGAGAAGCTGTCCTGTCTGAGCTCTGAGGACTGGAGGGTGTTTCTGCAGCAGCTGTGCTCTTCTCTGGAGGCCCAGGCTGATAAGACCACGACGGGGGTCCGCTCTAAACTCAACCTCCTCTGCTATCTGTGTACCATAGCTGCCCACAAGGACACAGCTACCAGGCTCATCAACTCCGAGCTGTTCCCTGTGTTGACCCAGCAGCTGCGTCTAGCACCTAACTGGGATGTaAAGTTTAAGGTGATGCGGGTGCTGGGGCTGCTGGCATCCCACTGCACTGAGCTCAGAGAGGAGACCCCCGTCACTGAGGCTGTTGTCATGTTCACGGAGCTGATCAGGGAGAACTTCAGGAACAGCAAACTGAAGCAGTGCCTGCTGCCGCCACTGGGGGAGCTGCTCTACCTCATCGCCACACAGgaggagaagaaagagaaccCAGGAGAGCTGTGGGTTGTTCCTGCTGCCGCCTACACAGTGTTAATGAGGTGCCTTCGGGAAGGGGAGGAGCTGGTTGTGAACCACATGGTGTGTAAGATGGTGGAGAACGTGTGTACCCCGGCGTCTCACTACGCCCAGGGCTTCATCACCGCGGAGATAGGCCCCATGCTCTGGTACCTGTTCACACACTCCAGCGTCGACTCACTACGCGTCAGCGCCATCTCAGCCCTGTGTAGAATCACCCGCCTCTCAGCCAGTGCCTTCCACAGTGTGATTGACAAGGTGGGGCTGCCAGCCATCTTAGCCAGCCTGGTGTCGGGGATCAGCCGTGTCCAGCAGCACATACTCACCATGTTCTCTGCCATGCTGGCGTCAGGGGCCCACGCCCAGCTACACAGACTAGTCCAGGAGCGGgACTTTGTGGTGAAGATAATGCGTTCACTGGAGAGCCCGTCCTCTGTCATCAGAGCCAAGGCCTTCCTGGTTCTCCTTCAGGTCCTCTGCAGCAACAGGGACATGCTGCTACTCTGCTGCAACTCTAGACTGGTGATGTACATTGAAAGAGACATCAGGCAGGCCACGCCAGGGAAGGAGCTACAAAGCACCAATGAATACCTGTCAAAATGCCTCCATCTGCTCATCCGTCACGTCGTGCTGCAGCTGCCAGCCATTCTGGATGACATGCTGTCCGCGCTGGGCAGTATAGTGGGCAGGAAGCATCCCTCCACTGTTCAGGCCAAGCAGCTGAAACAGAGTGTACCCATGATGACTGTGGTGCTCCACCTCCTCACCTCTCAGATATTCAGGCCACAGGTTGTGACTGAGGAGTTTCTCTTCAAATTTGGAGCACTGCTGAGTCACATAACATCTATTGATGCCAGTGAGACCAGTTTGGGCAGTGCAATAGGACAAGCAGGTTCAGAGGAGCTGATCAGGAACACTCTGTCAGCTGTGGAGGCCATCACCCAGCACCCAGCCCTGCTGACACCCCATCACTGTCCTGTTGTTGATTGCATTCTTCCTCCACTGACTTCTCTTGCCTTCAGTAAAAATGTGGAGTGGCGTATCGTCAGCTTGCGTGTTCTGTCAGAGAtcacactgctgctgctgagCCAAGAGGccgtggaggagggagagaggagagagagagagtgcaactCTTCAACTGGCAGACTACTGACTCTCATTACAGAAGCCCTTCTTCCACAGTATGAATCTCTCCTGTTGGAGCCAGACCCAATCCCAGTCTACGCTCTCAAGCTGCTGGTGGCCCTCACAGAACACAGCAGCCCCGTCAACAGcCTGGTCAGAGACAGCAGGATCCTACCTGTTGTCTTTCAAGTCATGGCGGAGCACCAGGACAATATCCTGGGTGGAACCATGCAGAAGGCCATGGCTCTCCTCAGCAACCTGACTGGACAGAAAGACGTGGATCTACAACCCTTCTACCAACAAGGTCTGGTGGAGGTGGTCTGCAGTGTCTTCAGCGAGGCAGCCGTTCTGTacgtggagagagaggagaggcctggGAGAAAGAATAGCCATGATCTCCTGTTGTCTCTACTGGACACTCTGCACAATGTACTGACCAGCACATCCAGAGTGGTGCGCATTGCACTCCAGGGAGCTGAGTCCCAGGGAGAGACCCAGGCTGCAGAGGACCTCCTGCTCATCAACAAACCTCTGACACAACTCACATCCCTGCTCATTCAGATGCTGCCGTGTGAGGATGTGGAGGTGTATGAGGAGACCAGTCAGTGCCTGTCCCTGCTGATGCAGCTGTATGGAGGGGACAGCCCTGACTCCCTCAGCCCCCTGAACCTCCAGAGCCTCAGCCACGCGCTGCAGCTCCAGACCCAGCCTAAACAACACAGACTACTGCTCCGTATCATCAAACGCCTGATTCCAGCTACTACAGACAATTTGTGGTACAGCTCGGCTGAGGGTCAAGAGCTGGTCCATGTTCTTCAGAGACTGAGTCATTCTGCCAGGTCCCATGCTGATGTTGCTGTGGTTTCACTGGCAGTGGAGATCCTGACAGGGATTGGATTCTAGAATGTTGATTCATCAGCAACAATGGATTGGCTTCGAGAAGGACCATAATTCAGATCAGTGATCAGCAACATAAACCGTGTCTCCATTATGGTGCCTTGCTCTACTGCTTTATAATAAAACTGGAATGCAAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248159 lncRNA downstream 12692 4122341 ~ 4122614 (-) True G217802
TU248158 lncRNA downstream 16698 4118371 ~ 4118608 (-) True G217801
TU248154 lncRNA downstream 21144 4113583 ~ 4114162 (-) True G217797
TU248153 lncRNA downstream 28712 4106312 ~ 4106594 (-) True G217796
TU248143 lncRNA downstream 38242 4096669 ~ 4097064 (-) True G217790
TU248508 lncRNA upstream 93758 4447883 ~ 4450903 (-) True G218075
TU248510 lncRNA upstream 96847 4450972 ~ 4451626 (-) True G218076
TU248521 lncRNA upstream 138376 4492501 ~ 4492740 (-) True G218083
TU249879 lncRNA upstream 160229 4514354 ~ 4514657 (-) True G219085
TU249905 lncRNA upstream 215296 4569421 ~ 4569831 (-) True G219109
XM_036966141.1 mRNA downstream 96146 4029092 ~ 4039160 (-) True LOC110506736
XM_036966137.1 mRNA downstream 137187 3993014 ~ 3998119 (-) True LOC110506742
XM_021587252.2 mRNA downstream 409611 3719700 ~ 3725695 (-) False LOC110507329
XM_021587267.2 mRNA downstream 409611 3719700 ~ 3725695 (-) False LOC110507329
XM_021587276.2 mRNA downstream 409611 3719700 ~ 3725695 (-) True LOC110507329
XM_036966256.1 mRNA upstream 99366 4453491 ~ 4456931 (-) True LOC118944827
XM_036966268.1 mRNA upstream 181358 4535483 ~ 4553394 (-) False LOC118944829
XM_036966333.1 mRNA upstream 201560 4555685 ~ 4563316 (-) True LOC110507551
XM_036966353.1 mRNA upstream 212892 4567017 ~ 4589345 (-) False LOC118944831
XM_036966340.1 mRNA upstream 212892 4567017 ~ 4595213 (-) False LOC118944831
TU247757 other downstream 446002 3686402 ~ 3689304 (-) True G217459
TU247540 other downstream 796726 3338186 ~ 3338580 (-) True G217261
TU247125 other downstream 1075562 3046005 ~ 3059744 (-) True G216902
TU246996 other downstream 1396839 2736861 ~ 2738467 (-) True G216811
TU246045 other downstream 2009954 2124176 ~ 2125352 (-) True G216059
TU248501 other upstream 84971 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 84971 4439096 ~ 4440437 (-) True G218073
TU249887 other upstream 184537 4538662 ~ 4540441 (-) True LOC118944829
TU249925 other upstream 289845 4643970 ~ 4648803 (-) True LOC118944839
TU250017 other upstream 416225 4770350 ~ 4772051 (-) False G219200

Expression Profile