RNA id: XM_036966219.1


Basic Information

Item Value
RNA id XM_036966219.1
length 3358
RNA type mRNA
GC content 0.57
exon number 15
gene id LOC110510956
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4382494 ~ 4448908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAACCTTGACTCACCACCAGGCAGCAACACACCCCTGCTGCATAACTGTGTTTTGGGCTGCGTTGCTTTTTGGGaaatatctttctctctttcctctcctcctctccatcccatcCTTCCACTCTGGTACCAGTGATAAAATGTGCTGTTCCACGTGGTCTCCTCGTCATGGTAAACTCCTAGAGAACTCAGAGTATGTAATGAAAGGATGGGCAGGTGTTCTCGTGACCTCCGCAGCAGGACAGGAGAAGATGGTGGTGCTCCTCTCAGCTGAAGGGGACTGAGTATGCAGAAATTTGTGGAGGCGGATTACTATGAGCTAGACTGGTACTATGAGGAATGCACAGATGTTCTATGTGCTGAAAGAGTGGGCCAGATGACTAAGACGTACAGTGACATAGATGCTGTTACTCGTCTGCTTGAAGAGAAAGAACGGGACTTGGAGCTCGCCGCCCGCATCGGCCAGTCACTGCTGAAGAAGAACAAAACCCTCAGTGAGAGAAATGAATTCCTGGAGGAGCAAGTGGAGCACATTcgagaggaggttTCTCAGCTGCGCCATGATCTGTCTATGAAAGATGAGCTTCTCCAGTTCTACACTAGTGCAGcagaggagagtgaaggagattCGTCCACCTGTACCCCCATCCGCCACAATGACTCCACACTGTCGGTGCCAAGATACTTCCCCCTGGACTCACTGCAGAAGAAACTCAAAGACCTGGAGGCAGAGAACATCTCTCTCAGATCAGAGGCCAGTCACctggagacggagacagaggagTACGAGGAGAAGGAGCAGCAGCTGGTCAACGACGTCGTCAAAGAGCTGAGAGATGCCAACCACCAGATGTCCACCCTGGCGGAGGAGCTGGCGAGGAAGACGGACGACGGGTCTCGCCAGCAGGAGGAGATCACACACCTCCTGTCCCAGATCGTAGACCTGCAGAAGAAGTCCAAGTCTTATACAGTGGAAAACCAAGAGCTCACCCAGCATCTAGGGGCTGCCAAAGATGCCCAGCGCCAGCTCACTGCTGAGctgagggagttggaggataaGTATGCAGAGTGTATGGAGATGCTCCATGAGGCCCAGGAAGAGCTGAAGAACCTCCGGAATAAATCACTACCTCTCAGTACACCCCGACGCTTCCACTCCCTGGGCCTGTTCCCTATGGACTCTCTAGCTGCCGAGATTGAGGGCACCATGAGGAAGGGGCTGGCTATGGATGACCCGGAAGTGGAAGAGCAGAAgttgcaCCCCAAGCGTGTGTTTGAGACTGTGAAAAACGTTAACCTGATGCGTCAGCGCTCCTCTCTGGCCCCGTCTCCCATGAACATCCCCGGCTCCAACCGGTCGTCCTGTCTGAACTCTGGCCGCTCCAGCTGCCTGTCCACGCCCCGCTCCAGCCTGTACGGAGGAGATATGGGGAGCATCCTCATAGACAACCACACCAACAGCTTCATACTGGAGACGCCTGACCACAGtacggATGACTCCAACAAGAAACCAGGGACCCCTGGAACGCCGGGCTCTCAGGATCTGGAAGCAGCCCTGCGACGTCTCTCCCTGCGGCGGGACAACTACCTGAGCGAGCGGCGGTTCTTCGAGGAGGAGAGGGATCGGAAGCTCCAGGGGCTGgtggagaagggagaggtggACAACGGCAGTATGACCCCCACAGAGAGCATCATGTCCCTGGGAGGAACCCACCTCTCTTCCATCTGGTCTGGGTACTCCTTCAGCTCCCGCTCCTACCTGCCGGAGAAGCTGCAGATCGTCAAGCCACTGGAAGGCTCGGCCACCCTGCACCAGTGGCAGCAGCTGGCTCAGCCCAACCTGGGTGGGATCCTGGACACGCGGCCTGGTGTGGTCACTAAGGGCTTCCGTCCTCTGGAACTAGACCTGGAGCACATGTACCTGTTCACTGACTTTGAGGAGGAGGACTTTGAGGTAGTGGAGGAGTCTGACCACCTGTCTGTCTCAGGCTCTACCCCCGGCTGTAGTGGCATCTCCATCCTCAGCCGGCAGGGCCTCCGTACccgctcctcctcctgctcctcctcctgcagCGGCAGATCCATCAACAACAACCTTCCAGAGGGAGAAGCCAGGGAAGAGGGCAAGACAGGCCCAGGCAGCACATCACTGTCGTCCCCTGCACCTCCAGACAGCGAGAACCAGGAGAACCAGGATCAGGCTGCAGCCGCTGACGGGGTGTCTGCCCACTTCCCTGGTAAATGCATGTCCAACACCAGCTCCACCTATACCTTCACCACCTGTCGGATCATGCACCCCTCAGACGAGCTGACCAGAGTCACCCCCAGcctTATGTCGGGTCCTACTGCCTCCTGCGTcatgaccagcagcagcagcgtcAGATCTACCCCCTGCTCAACCCCTTGCACCCCGCGCCGCCTCAGCCTGGCAGCCGAGTCCTTCACCAACCTGAGAGACTCCACCAAGACCATGAGCACTAGTGGAGGTCTGGTGCGGCTCCTCCAGGAGCGAGGCATCTCTGCAGCAGTCTACAACCCTCAGAGCTGGGACCGGGCAGACTGTAGCACCTCCATCCCCACTGGGGGGGTACCGTCGCTTCTACCGCCGCGGCCCCCTGACACCCTACCCTCCACGCCGCCCAACTCCCCAACCCACCGCTCCCTCTGTGCCAAACCCAGCAGCCCCGTGGGCCCCTTCGAACTCAGTCCCAGCGCCCCGCCCTATGACAACTTCCTGGCATCGAAGCCGGCCAGCTCCATCCTGAAGGAGGTGAGGGCAGAGGCCCAGAGCAGTGAGTCAGCAGACAGGGAGTGTCAGACTGACGTCAGCGTCCACAATCTGAAGCTGGTGGACAAGCTGAAGCGCTTCAGCGTGGTTGGGGCCGGCCCCTCTTTATCAGGGGCCACGGGGCCCACCATGCTGGggcccctcagcagcctccaccgcCCTTCCCACTTCTGCCCTTCTGTGGTGACCAGTCCCATAGGGGGCCTCGGCCCCGCTCTGAACACAGGCATCCGCCGTAACCGCAGCTACCCGGCCATGGTAGGAGCCGGCATGGCTATGAAGGGCCCGGGGCCCCACAGCCCCACAGACATGCTCCTGGCTTCTTCCTCCAAACTCCCCAGACAGACTAGTCTCAATGATGGGTGAATGAATGTTGACTTTTCTCTTCTGTCTGTCACCTGTCAGATGAGTTGGATGTATATATATCTGCTGTATGAGTCCCCGGTCTGTGACAAATCAACTCTGTGCCTGAAAGAGATGCCCTTTCTTTTTACAGTGCATTTTGTATCAATGCTaattattttgtcttcctttctttctttctctattctgtctctctctcctctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248322 lncRNA upstream 1498 4406510 ~ 4406927 (+) True G217927
TU248315 lncRNA upstream 18042 4389809 ~ 4390383 (+) True G217921
TU248310 lncRNA upstream 22865 4384651 ~ 4385560 (+) True G217916
TU248299 lncRNA upstream 37314 4370794 ~ 4371111 (+) True G217907
TU248295 lncRNA upstream 41078 4367124 ~ 4367347 (+) True G217903
TU248344 lncRNA downstream 44702 4493610 ~ 4493923 (+) True G217949
TU248347 lncRNA downstream 49563 4498471 ~ 4500717 (+) False G217950
TU248348 lncRNA downstream 49563 4498471 ~ 4500466 (+) False G217950
TU248353 lncRNA downstream 49563 4498471 ~ 4500717 (+) True G217950
TU248549 lncRNA downstream 110601 4559509 ~ 4559920 (+) True G218107
XM_036966188.1 mRNA upstream 273273 4096870 ~ 4135152 (+) False LOC110512888
XM_036966283.1 mRNA downstream 65415 4514323 ~ 4531079 (+) False LOC110518117
XM_036966287.1 mRNA downstream 65415 4514323 ~ 4531079 (+) False LOC110518117
XM_036966296.1 mRNA downstream 65415 4514323 ~ 4531079 (+) False LOC110518117
XM_036966301.1 mRNA downstream 65415 4514323 ~ 4531079 (+) False LOC110518117
XM_036966311.1 mRNA downstream 65415 4514323 ~ 4531079 (+) False LOC110518117
TU248238 other upstream 105569 4297556 ~ 4302856 (+) False G217870
TU248166 other upstream 265336 4142643 ~ 4143089 (+) True G217809
TU247417 other upstream 679269 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 863947 3540799 ~ 3544478 (+) True LOC110520752
TU247383 other upstream 868519 3537839 ~ 3539906 (+) False LOC110520752
TU248288 other downstream 2846 4451754 ~ 4452556 (+) True G217896
TU248792 other downstream 488189 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 496095 4945003 ~ 4961450 (+) True G218293
TU248804 other downstream 569786 5018694 ~ 5021873 (+) False LOC110507709
TU248783 other downstream 876519 5325427 ~ 5326009 (+) True G218301

Expression Profile